G1717748


Basic Information

Item Value
gene id G1717748
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23198728 ~ 23199596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1968011
caatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaacctgaagtaaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgatccaAGAcgaggaatttttactaggattaaatgtcaggaattgtgagaaacttccgacttcaactgtatgtttcccatgccaataaagcgccTTGAATTGATATACAgtgtttgagagagaggagaccttGAAGGGACAATGATGGCTGAACTGAAATATGAATCAGTCTCAGTCCTAGTGATCAGGGGGCTTCTTTAGTGTCACACAAGTGCTATCTGACCCGCAATTGTATTATTAGTCGTGTGAGGAGACTGCCATGACAACCGAGTGACCTGATGGCGAAGGTGAAGGATTTGAGGGGGATACTCCcttacacaaaaaaacacatgatTTGACATGTGACAAATCACACAATATTTCACGTTGAAatcatgtttttggaacacttcacgtgaTCACATTTTCATGTGTCGGTTGATGTTATCACACGTCGCTTTACATGTTATCACATTAATTTCACATAAGATCACGTGAAGTTCGGCGGCTGTCAGTTTTCAGAGTAGGACCATTTTCTTTTCCCACATAGAGGAAATACTATTTCCGACAGTACTTATTATTAGCCCTGTCTTTGAGCTTAGATGGGACTCAAAGGGGAACGTTTTCCAAACCCTTTTATGTTGGCTAAAGCTCTTACAGCCTAATGCCTTCAACACCATATCAGATTTTTTCCCCCTCCAGCTTTAACAATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1968011 True 835 lncRNA 0.39 2 23198728 23199596

Neighbor

gene id symbol gene type direction distance location
LOC110500046 LOC106609461 coding upstream 9072 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 38055 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 93722 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 97905 23098972 ~ 23100823 (+)
LOC110500039 LOC100194705 coding upstream 157903 23033725 ~ 23040825 (+)
ascl1a LOC106576285 coding downstream 19348 23218944 ~ 23220765 (+)
LOC110500049 LOC106576281 coding downstream 96187 23295783 ~ 23313876 (+)
th2 LOC106609447 coding downstream 114739 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 141592 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 193931 23393527 ~ 23397736 (+)
G1717680 NA non-coding upstream 14654 23179545 ~ 23184074 (+)
G1717730 LOC106576289 non-coding upstream 36322 23161606 ~ 23162406 (+)
G1717725 LOC106609435 non-coding upstream 50959 23146757 ~ 23147769 (+)
G1717720 NA non-coding upstream 64319 23133232 ~ 23134409 (+)
G1717786 NA non-coding downstream 57786 23257382 ~ 23257585 (+)
G1717787 NA non-coding downstream 58241 23257837 ~ 23258062 (+)
G1717789 NA non-coding downstream 60549 23260145 ~ 23261049 (+)
G1717790 NA non-coding downstream 61739 23261335 ~ 23261638 (+)
G1717791 NA non-coding downstream 62074 23261670 ~ 23261872 (+)
LOC110500038 LOC106609436 other upstream 175964 23014617 ~ 23032420 (+)
G1717520 NA other upstream 318805 22820752 ~ 22879923 (+)
G1717517 NA other upstream 347321 22849892 ~ 22851407 (+)
G1717516 NA other upstream 414283 22718919 ~ 22784445 (+)
G1717785 NA other downstream 56530 23256126 ~ 23256812 (+)
G1719225 NA other downstream 873809 24073405 ~ 24074448 (+)
G1719268 NA other downstream 936168 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 1078235 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1117042 24315919 ~ 24321712 (+)

Expression


Co-expression Network