G1717789


Basic Information

Item Value
gene id G1717789
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23260145 ~ 23261049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1968055
cttgaccaggtttccacacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatacggactttcagctccctccaaatattttctattgggttcaggtctggagactggagactccaggaccttgagatgcttcttacggagccactccttagttgccctggctgtgtttcgggtcgttgtcatgctggaagacccagacacgacccatcttcaatgctcttactgagggaaggaggttgttggccaagatctcgcgatacattgccccatccatcctcccctcaatatggtgcagaagtcctgtcccctttgcagaaaagcatccccaaagaatgatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcttcttcctccaaacacagcgagtggagtttagaccaaaaagctctatttttgtctcatcagaccacatgaccttctcccattcctcctcgtctcctctctcatccagatggtcattggcaaacttcagacgggcctggacatgcgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccatgacggcgtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcattatcattgatgccccacaaggtgagatcttgcatggagccccagaccgagggtgattgaccatcatcttgaactttcgaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1968055 True 905 lncRNA 0.52 1 23260145 23261049

Neighbor

gene id symbol gene type direction distance location
ascl1a LOC106576285 coding upstream 39380 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 70489 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 99472 23157083 ~ 23160673 (+)
amdhd1 amdhd1 coding upstream 155139 23100978 ~ 23105006 (+)
ruxf LOC105021811 coding upstream 159322 23098972 ~ 23100823 (+)
LOC110500049 LOC106576281 coding downstream 34734 23295783 ~ 23313876 (+)
th2 LOC106609447 coding downstream 53286 23314335 ~ 23327014 (+)
LOC110500052 NA coding downstream 80139 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 132478 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 144413 23405462 ~ 23423738 (+)
G1717787 NA non-coding upstream 2083 23257837 ~ 23258062 (+)
G1717786 NA non-coding upstream 2560 23257382 ~ 23257585 (+)
G1717749 NA non-coding upstream 50747 23198038 ~ 23209398 (+)
G1717748 NA non-coding upstream 60549 23198728 ~ 23199596 (+)
G1717680 NA non-coding upstream 76071 23179545 ~ 23184074 (+)
G1717790 NA non-coding downstream 286 23261335 ~ 23261638 (+)
G1717791 NA non-coding downstream 621 23261670 ~ 23261872 (+)
G1717792 NA non-coding downstream 1246 23262295 ~ 23262494 (+)
G1717794 NA non-coding downstream 5247 23266296 ~ 23266686 (+)
G1717800 NA non-coding downstream 13682 23274731 ~ 23275055 (+)
G1717785 NA other upstream 3333 23256126 ~ 23256812 (+)
LOC110500038 LOC106609436 other upstream 237381 23014617 ~ 23032420 (+)
G1717520 NA other upstream 380222 22820752 ~ 22879923 (+)
G1719225 NA other downstream 812356 24073405 ~ 24074448 (+)
G1719268 NA other downstream 874715 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 1016782 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 1055589 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2350767 25611816 ~ 25612268 (+)

Expression


Co-expression Network