XLOC_003661 (si:ch211-193i15.1)


Basic Information

Item Value
gene id XLOC_003661
gene name si:ch211-193i15.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40208239 ~ 40215554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007117
acacacacacacacacacacacacacacaagctgtaAGAGCAGGTGAGACAAAAACGCAGCGTTTAGACACATCCCACAGCAGGAGGGTGAACACACACTGAAACTCACAGACGGCAGAGGAGACGGTAATGCAGGAGTTTCTGAGGGTCTCCTGAGGGTCTGTGGAGCTGCAGATTCAGATTCTTCATCTCAGCTGGcgGGTGAGGATGGAGGGCGTTCTGGAGACTGCgctgtctgtgtgtatgttcagaCTGATGATCAGTGTATTGTTGTGTCCATCTATACTCACACACAGCACCACTGCGGTCAGTCTGTGCTGCTGCTGCCTGGTTCTCTTCACAGACCTCGCCGTCACCTTGTTCCTGCTCTACATGTGGCTGGTGGAGTTCTGGACGATTCCCTTTTCAGTGTCCTCAGACGTCATCGGCCTGCGCTTCCTGCTGTTTCTGTGTCAGTCTTATGCAGTGGTGCTGCTCTTAACACCTCCTCTGATGGCTGTGGAGATGCTGCTTCATATGCTGCAGCCTCAAAACGCAGGTCAATCCCACCACAAGCAATGCCTTTCTAGGATCATCGGCTTCTTGGGATGTTGTCTAGCATGGACGGTGAGCGCGCTTTACTGCAGCCATGACTGGACGCTGGAACGGATGTCTGTGGAGGATTGTCTGAAGAAAGAAGGATGGCTTGTGTTGTGCCTTCCCCATTTTGATGACTTATACAGCGCTCTTCTTGCACTGGTGGTCCTGTTGAGTTTGACAGGGGGTTTAATCGAGATGAAGGCGTCCCGTAGAACACCTCAAGATGACATCAAGCTTATGCATACGTCACTAACTCTGGTAGAATGTGAAAAGGCCGCCGGCAGCTGTGCTGTTCACAGGGTTGGGTTTGTGTACAGTGAGCCGCGATGGTTGTGTCCTCAGAATGATGCGCTGTGCCCTGAACAAACCAGTTTGACAGACGGTTACATCCAGAAACAAAGGCAATCAGCCGGCCGTGCTGTGTTTGCGCAGTCTAAAAGTGATCTTCTGCTGGAGGTCTCATcactgctgtgtaaaacagatcAGCGGATCTCTAACTGCACACACTGCCGCCTTCATAAAAGGGAAAGTCCCTGCTTGGGGCCAGAAATGTTCACAGGGTTGGTATGCGTGGCTCTGCTTTGCTGTTTTCCCACAGTCGTCAGCAGTAATGTTCTTCTAATCTTTAACCTGGAGAAGCTGGTGGCGTACAGTTTGAAACTCTTATCTCTGTCAGTCAAAAGACGCCCGCTTCTGTAAATGATGTTGGAAAAAAAACTCTGAATGACCTCTGACACTGGATCTGTTTTGGAATTGAAGAAACTggattattaaaaagaaaatttacacaaaaaaatgGTTGTAAGATTATTTTAGAGGAGCCAAAAACAGAAAGACTCTCCTACAGCATCATTAC

Function

symbol description
si:ch211-193i15.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-405 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000098988

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007117 True 1435 mRNA 0.49 3 40208239 40215554

Neighbor

gene id symbol gene type direction distance location
XLOC_003660 si:dkey-264d12.5 coding upstream 39861 40148181 ~ 40168378 (+)
XLOC_003659 NA coding upstream 91593 40111481 ~ 40116646 (+)
XLOC_003658 si:dkey-264d12.1 coding upstream 135938 40032790 ~ 40072301 (+)
XLOC_003657 per3 coding upstream 187159 39959039 ~ 40021080 (+)
XLOC_003656 vamp3 coding upstream 251314 39928828 ~ 39956925 (+)
XLOC_003662 NA coding downstream 4501 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding downstream 91025 40306579 ~ 40311746 (+)
XLOC_003664 mmel1 coding downstream 315194 40530748 ~ 40605868 (+)
XLOC_003665 AL954137.1 coding downstream 358389 40573943 ~ 40578255 (+)
XLOC_003666 AL954137.2 coding downstream 402342 40617896 ~ 40641787 (+)
XLOC_003369 CR854846.2 misc upstream 24085157 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27496243 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27513976 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27522640 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27528211 12679732 ~ 12680028 (+)
XLOC_003655 NA non-coding upstream 281367 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 728972 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 917605 39287369 ~ 39290634 (+)
XLOC_003652 NA non-coding upstream 924263 39262536 ~ 39283976 (+)
XLOC_003669 NA non-coding downstream 649401 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 673626 40889180 ~ 40889294 (+)
XLOC_003671 NA non-coding downstream 676127 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 681772 40897326 ~ 40899889 (+)

Expression


Co-expression Network