G1717822


Basic Information

Item Value
gene id G1717822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23329589 ~ 23330057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1968089
ggAAAATGAAATACTTTATTGAAAAATTATGAAAATAGAAATATCCAACCACACCTCATGTCAAACAGTTTCAATGTACATTTGCATTGCCTCCCGTATGTCAATAGGGAGTGACTGCATTACATTTCTGTCATCCAAAAAGAGAGCTTTCGGTCACCGCCAATGACACAGAGTGGGAGGGACCTGTGCCAGCTTAGACCCGCCCCCACCGTGGCTGATCCAATCATCACGGGCTGCGGGTGACCAAGGTGATGCACTAGTAACTGACTGCTGATCTTGCCTGGACATCCTGTTGTGGAGAAGAGATTCTC

Function

NR:

description
nucleoporin Nup37 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1968089 True 311 lncRNA 0.46 2 23329589 23330057

Neighbor

gene id symbol gene type direction distance location
th2 LOC106609447 coding upstream 2575 23314335 ~ 23327014 (+)
LOC110500049 LOC106576281 coding upstream 15713 23295783 ~ 23313876 (+)
ascl1a LOC106576285 coding upstream 108824 23218944 ~ 23220765 (+)
LOC110500046 LOC106609461 coding upstream 139933 23164105 ~ 23189656 (+)
klhl42 LOC106609448 coding upstream 168916 23157083 ~ 23160673 (+)
LOC110500052 NA coding downstream 11131 23341188 ~ 23353769 (+)
LOC110500056 ccd53 coding downstream 63470 23393527 ~ 23397736 (+)
LOC110500058 LOC106576272 coding downstream 75405 23405462 ~ 23423738 (+)
LOC110500067 LOC106609471 coding downstream 171067 23501124 ~ 23504811 (+)
ada2b LOC106609445 coding downstream 174991 23505048 ~ 23510558 (+)
G1717800 NA non-coding upstream 54534 23274731 ~ 23275055 (+)
G1717794 NA non-coding upstream 62903 23266296 ~ 23266686 (+)
G1717792 NA non-coding upstream 67095 23262295 ~ 23262494 (+)
G1717791 NA non-coding upstream 67717 23261670 ~ 23261872 (+)
G1717790 NA non-coding upstream 67951 23261335 ~ 23261638 (+)
G1717875 NA non-coding downstream 113634 23443691 ~ 23444109 (+)
G1718589 NA non-coding downstream 156042 23486099 ~ 23486376 (+)
G1718597 NA non-coding downstream 159285 23489342 ~ 23489551 (+)
G1718603 LOC106609391 non-coding downstream 183695 23513752 ~ 23513999 (+)
G1717785 NA other upstream 72777 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 228780 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 306825 23014617 ~ 23032420 (+)
G1717520 NA other upstream 449666 22820752 ~ 22879923 (+)
G1719225 NA other downstream 743348 24073405 ~ 24074448 (+)
G1719268 NA other downstream 805707 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 947774 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 986581 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2281759 25611816 ~ 25612268 (+)

Expression


Co-expression Network