G1718685


Basic Information

Item Value
gene id G1718685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23570623 ~ 23572286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969075
TCAATTACATGTTCATAAATGTTTTCGTATCAATGTACAGTTCATCAAGTGGAATGACCTCAATTCAATTATTTCCAAATAGACCACAATGGCTGATTGTGAAATAAGTTGGTTGAAATGAATGCACACACTTTCTTTTTGTTGTAGTACAGTACAATAAAATCAGCAATGTCCTGGCATGCTATTATACTGACTTATAGAAAGATAGCAAAACAGTTACTCAGTACATCACACAATATCATCATTAAGCGCACCAGCTATTGTCTGTGGGGCTCTCTTAAATAACAATGTTCAGCGAGCACTGAAAAATAAACAAGAAAACCATTCAAATTACAATTGAAACATggtaaaaatatacatatttcatTTAAGACATTGCCAATGTGACCTGGTTATGTATACATACAGTGCTTGAGATATAAACTCGGCCAAAAAGAAACatccttttttcaggaccctgtctttcaaagattattcgtaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacactgtttcccatgcttgtcaaattaaccataaacaattaatgaacatgcacctgtggaacggtcgttaagacacgaacagcttactgacggtaggcaattaaggttacGGAATTAAGGAAAACTTAAAgacactgaagaggcctttctactgactctgaaaaacaccaaagaaaagatgcccagggtccctgctcatctgtgtgaacatgccttagcTGTGCCTCAGCTGCATGCCTCagctgcgtgaacgtgccttgcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatatccgtactgtgagacgcctaagacagcgctacagggagacaggacggacagttgatcgtccttgcagtggcagaccacgtgtaaccatgttcatacaaatattcacacatgttaagtttgctgaaaataaacgtagttgacagtgagaggacatttattttttgctgagtttattacccCAAATATTTCATATACAGGTCACACCTTAAACCAATAAGTTAATCATAACAAAAGTGTAAAATGTACATTAAATGCTGTACTGTTCAAAAGGAAATATATTCTGAACATGGTACAAATATAAAAACAGTTTTAAAATGACTTTCTCTAACTGGAGCATGTGAAAAGCATCAGCACCAGTTTCCTTAAAAAGAAGCTTACAGAGAACAAAAAAAAGCTACCTTCCTTCATTTGGCCCAGGTTTTATTGAAGAAAGCTGAACATTGCAGCAAATGATCTTTTTGTCAAGGTAAGAGAAGTTAATCAAAATAGATGGAACTGCTTTTTTGAGGAATTAAGAGCtttaaaaaaatgacatttgtgtgaggaataaaaaaaaaacagacgaTGCATTGGATGCTGAAAGGCACATTTGAATAACAAGTGGTGAGGATCACTGGTCAGAATATTCCTGTTTTGTAGACACCGGGAAACTTTGTATATGACAATGACGTATGAAGAATATCAAACCATCCAATCCCAGTCCAAGCTTGGCATTTCAGGTCAGGAAAATAACATTCCTTTACATTGACCACTTGAGGGCCCTGTTTTTGAGCTAACAGTTGTCAGCTCGACAGCCGCCCTTTCACTGACTTACAGGTGATTGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969075 True 1664 lncRNA 0.38 1 23570623 23572286

Neighbor

gene id symbol gene type direction distance location
ada2b LOC106609445 coding upstream 60065 23505048 ~ 23510558 (+)
LOC110500067 LOC106609471 coding upstream 65812 23501124 ~ 23504811 (+)
LOC110500058 LOC106576272 coding upstream 146885 23405462 ~ 23423738 (+)
LOC110500056 ccd53 coding upstream 172887 23393527 ~ 23397736 (+)
LOC110500052 NA coding upstream 216854 23341188 ~ 23353769 (+)
LOC110500071 LOC106609473 coding downstream 41852 23614138 ~ 23622406 (+)
LOC110500073 LOC106609463 coding downstream 69104 23641390 ~ 23644750 (+)
LOC118942913 NA coding downstream 136176 23708462 ~ 23709161 (+)
LOC110500077 etv6 coding downstream 137983 23710269 ~ 23732052 (+)
LOC110500079 LOC106576259 coding downstream 160724 23733010 ~ 23791315 (+)
G1718611 NA non-coding upstream 16033 23523033 ~ 23554590 (+)
G1718629 LOC106609389 non-coding upstream 21583 23548116 ~ 23549040 (+)
G1718610 NA non-coding upstream 47861 23522449 ~ 23522762 (+)
G1718609 NA non-coding upstream 48836 23520687 ~ 23521787 (+)
G1718603 LOC106609391 non-coding upstream 56624 23513752 ~ 23513999 (+)
G1718689 NA non-coding downstream 6071 23578357 ~ 23578624 (+)
G1718691 NA non-coding downstream 8603 23580889 ~ 23581147 (+)
G1718696 NA non-coding downstream 12696 23584982 ~ 23585328 (+)
G1718701 NA non-coding downstream 20769 23593055 ~ 23593510 (+)
G1718704 NA non-coding downstream 25698 23597984 ~ 23598243 (+)
G1717785 NA other upstream 313811 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 469814 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 547859 23014617 ~ 23032420 (+)
G1717520 NA other upstream 690700 22820752 ~ 22879923 (+)
G1719225 NA other downstream 501119 24073405 ~ 24074448 (+)
G1719268 NA other downstream 563478 24135764 ~ 24136323 (+)
adm2a LOC106609361 other downstream 705545 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 other downstream 744352 24315919 ~ 24321712 (+)
G1720836 NA other downstream 2039530 25611816 ~ 25612268 (+)

Expression


Co-expression Network