G1719117


Basic Information

Item Value
gene id G1719117
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23952575 ~ 23952897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969537
CCCAGTACTTGTTTCTCTACtccagcgtcggtccttacagtgaaatgttttgctGCTTTGAGGACAAGATGTGAGGACACTTTACCACTGCAGGTAAAGTGTCGCCATGGTAACATTTGGTGACTTTGAGAAAATTACTGCCAGAACCTTTTTCAAGACAAAATGAATCTCATCTCATCTTTGGTTTGAGAATGTCTGTCTGATCTTATCTTATCATAACATGGTTATCATTTACACTGGAAATATTTGATTCAATTCCTTCAAGACATGCTATGATGATTACAtacgtatacagtgccttgcgaaagtattcggcccccttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969537 True 323 lncRNA 0.40 1 23952575 23952897

Neighbor

gene id symbol gene type direction distance location
LOC110500082 LOC106609433 coding upstream 16016 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 48888 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 161268 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 220523 23710269 ~ 23732052 (+)
LOC118942913 NA coding upstream 243414 23708462 ~ 23709161 (+)
rpap3 LOC106609438 coding downstream 23776 23976673 ~ 23985903 (+)
LOC110500093 LOC106609369 coding downstream 194146 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 223282 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 324900 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 363022 24315919 ~ 24321712 (+)
G1719112 NA non-coding upstream 502 23947696 ~ 23952073 (+)
G1719102 NA non-coding upstream 12889 23939367 ~ 23939686 (+)
G1718998 NA non-coding upstream 70197 23882164 ~ 23882378 (+)
G1718966 NA non-coding upstream 104806 23847133 ~ 23847769 (+)
G1718965 NA non-coding upstream 107487 23844811 ~ 23845088 (+)
G1719121 NA non-coding downstream 2783 23955680 ~ 23956003 (+)
G1719122 NA non-coding downstream 4614 23957511 ~ 23958195 (+)
G1719147 NA non-coding downstream 23950 23976847 ~ 23977071 (+)
G1719150 NA non-coding downstream 26237 23979134 ~ 23979603 (+)
G1719153 LOC106609441 non-coding downstream 35457 23988354 ~ 23988649 (+)
G1717785 NA other upstream 695763 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 851766 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 929811 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1072652 22820752 ~ 22879923 (+)
G1719225 NA other downstream 120508 24073405 ~ 24074448 (+)
G1719268 NA other downstream 182867 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1658919 25611816 ~ 25612268 (+)

Expression


Co-expression Network