G1719153 (LOC106609441)


Basic Information

Item Value
gene id G1719153
gene name LOC106609441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23988354 ~ 23988649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969575
CAATTAACACAACTGAGGTATTGGCAGTGCTGTTGTCATTGGTCACTGAGTTGTAAGCCACACAGCTGAGGGGTCCTCCGTCCATGGTGGTCTCAGGTGTAAGGGAGAAGGAGGCATTCATCTCTGCCAGCCTCCCCTTGTATATCCAGGTGTAGGTACAGGTGGGGTAGCACAGGGCCGAACACTGAAGGGCTGTCTTTGATCCAGGCAGGAGATACAAGACTTTACCCACTGGGCCTTTGCCAGATTGGATGATAACAGCTTGAAGTGGTCCATCTGGAAAATGTCATGAAATA

Function

NR:

description
hemicentin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969575 True 296 lncRNA 0.50 1 23988354 23988649

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 2451 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 51795 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 84667 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 197047 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 256302 23710269 ~ 23732052 (+)
LOC110500093 LOC106609369 coding downstream 158394 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 187530 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 289148 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 327270 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 378178 24366827 ~ 24374963 (+)
G1719150 NA non-coding upstream 8751 23979134 ~ 23979603 (+)
G1719147 NA non-coding upstream 11283 23976847 ~ 23977071 (+)
G1719122 NA non-coding upstream 30159 23957511 ~ 23958195 (+)
G1719121 NA non-coding upstream 32351 23955680 ~ 23956003 (+)
G1719117 NA non-coding upstream 35457 23952575 ~ 23952897 (+)
G1719154 LOC106609441 non-coding downstream 216 23988865 ~ 23989209 (+)
G1719155 LOC106609441 non-coding downstream 728 23989377 ~ 23989653 (+)
G1719156 LOC106609441 non-coding downstream 1135 23989784 ~ 23990093 (+)
G1719188 NA non-coding downstream 32548 24021197 ~ 24021448 (+)
G1719191 LOC106609456 non-coding downstream 39125 24027774 ~ 24037092 (+)
G1717785 NA other upstream 731542 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 887545 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 965590 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1108431 22820752 ~ 22879923 (+)
G1719225 NA other downstream 84756 24073405 ~ 24074448 (+)
G1719268 NA other downstream 147115 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1623167 25611816 ~ 25612268 (+)

Expression


Co-expression Network