G1719154 (LOC106609441)


Basic Information

Item Value
gene id G1719154
gene name LOC106609441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23988865 ~ 23989209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969576
GCAAAAATGGCTGTATAAATATAATTTATCTCTGCATATTCATACTCACAATTTACATTAAGTTGGTACCCAACCCCTTTGATGGCTGCTCCCCCCTGAGAAACGATGCATTGGTACAGCCCACCATCCGACTGCAGCAGAGGACTAAAAGACATAGTGATGTTGTTGGGGGAGAGACTGACCCTGCCAGACACAGCTATAGGGAGGCCATTTTTTAACCACAAAATGGAGGCTGGATTCTGAGAGCCCACACACTGCAGTGAGAAGGGCTGGTGTGCCAAGGGCTTGTCCTGGGACACCGGCTGTACAGAGATAGGATCTGGAAGACAGGGGAGTGGAAAAGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969576 True 345 lncRNA 0.49 1 23988865 23989209

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 2962 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 52306 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 85178 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 197558 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 256813 23710269 ~ 23732052 (+)
LOC110500093 LOC106609369 coding downstream 157834 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 186970 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 288588 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 326710 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 377618 24366827 ~ 24374963 (+)
G1719153 LOC106609441 non-coding upstream 216 23988354 ~ 23988649 (+)
G1719150 NA non-coding upstream 9262 23979134 ~ 23979603 (+)
G1719147 NA non-coding upstream 11794 23976847 ~ 23977071 (+)
G1719122 NA non-coding upstream 30670 23957511 ~ 23958195 (+)
G1719121 NA non-coding upstream 32862 23955680 ~ 23956003 (+)
G1719155 LOC106609441 non-coding downstream 168 23989377 ~ 23989653 (+)
G1719156 LOC106609441 non-coding downstream 575 23989784 ~ 23990093 (+)
G1719188 NA non-coding downstream 31988 24021197 ~ 24021448 (+)
G1719191 LOC106609456 non-coding downstream 38565 24027774 ~ 24037092 (+)
G1719194 NA non-coding downstream 48247 24037456 ~ 24037705 (+)
G1717785 NA other upstream 732053 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 888056 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 966101 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1108942 22820752 ~ 22879923 (+)
G1719225 NA other downstream 84196 24073405 ~ 24074448 (+)
G1719268 NA other downstream 146555 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1622607 25611816 ~ 25612268 (+)

Expression


Co-expression Network