G1719156 (LOC106609441)


Basic Information

Item Value
gene id G1719156
gene name LOC106609441
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 23989784 ~ 23990093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969578
GGACCACTCCAAAGTTGAAAAGAATGACAAATTCCACTCACGGGCCACATAAGGTGTAACATAGGTTGAGATGTAGAGGAGTGAGACAGTGTCCTGAGCCTCACAGATCAATTCCTCTGCAATCTCCCAGGAGTCAGGTGTGACGGAGATGGTTTGACCATATTTGGTGGTCACTGTGCTTTGTGCTTCAGAACTAATTGTCCAGGTGTAGGAGCAGGACGGGTAGCAATCAGCAGAGCAGGAAAAGTTGGACGTCACTCCACTGGACAGTGTATCAGGACCTGTGATCTTTATATTGGACGGTCCAGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969578 True 310 lncRNA 0.48 1 23989784 23990093

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 3881 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 53225 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 86097 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 198477 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 257732 23710269 ~ 23732052 (+)
LOC110500093 LOC106609369 coding downstream 156950 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 186086 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 287704 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 325826 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 376734 24366827 ~ 24374963 (+)
G1719155 LOC106609441 non-coding upstream 131 23989377 ~ 23989653 (+)
G1719154 LOC106609441 non-coding upstream 575 23988865 ~ 23989209 (+)
G1719153 LOC106609441 non-coding upstream 1135 23988354 ~ 23988649 (+)
G1719150 NA non-coding upstream 10181 23979134 ~ 23979603 (+)
G1719147 NA non-coding upstream 12713 23976847 ~ 23977071 (+)
G1719188 NA non-coding downstream 31104 24021197 ~ 24021448 (+)
G1719191 LOC106609456 non-coding downstream 37681 24027774 ~ 24037092 (+)
G1719194 NA non-coding downstream 47363 24037456 ~ 24037705 (+)
G1719197 NA non-coding downstream 48842 24038935 ~ 24059956 (+)
G1719259 NA non-coding downstream 129937 24120030 ~ 24120398 (+)
G1717785 NA other upstream 732972 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 888975 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 967020 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1109861 22820752 ~ 22879923 (+)
G1719225 NA other downstream 83312 24073405 ~ 24074448 (+)
G1719268 NA other downstream 145671 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1621723 25611816 ~ 25612268 (+)

Expression


Co-expression Network