G1719259


Basic Information

Item Value
gene id G1719259
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24120030 ~ 24120398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969699
gtcacagtacatgttggcattcatggttccctcaatgaactgtagctccccagtgccggcagcactcatgcagccccagaccatgacactcccaccaccatgcttgactgtaggcaagacacacttgtctttgtactcctcacctggttgccgccacacacgcttgacaccatctgaaccaaataagtttatcttggtctcatcagaccacaggacatggttccagtaatccatgtccttagtctgcttgtcttcagcaaactgtttgcgggctttcttgtgcatcatctttagaagaggcttccttctgggacgacagccatgcagaccaatttgatgcagtgtacggcgtatggtctgagcactgac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969699 True 369 lncRNA 0.50 1 24120030 24120398

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 134127 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 183471 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 216343 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 328723 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 387978 23710269 ~ 23732052 (+)
LOC110500093 LOC106609369 coding downstream 26645 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 55781 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 157399 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 195521 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 246429 24366827 ~ 24374963 (+)
G1719197 NA non-coding upstream 60074 24038935 ~ 24059956 (+)
G1719194 NA non-coding upstream 82325 24037456 ~ 24037705 (+)
G1719191 LOC106609456 non-coding upstream 82938 24027774 ~ 24037092 (+)
G1719188 NA non-coding upstream 98582 24021197 ~ 24021448 (+)
G1719156 LOC106609441 non-coding upstream 129937 23989784 ~ 23990093 (+)
G1719261 NA non-coding downstream 959 24121357 ~ 24121653 (+)
G1719266 NA non-coding downstream 12960 24133358 ~ 24133639 (+)
G1719267 NA non-coding downstream 13687 24134085 ~ 24135639 (+)
G1719269 NA non-coding downstream 16868 24137266 ~ 24137614 (+)
G1719277 NA non-coding downstream 44244 24164642 ~ 24164864 (+)
G1719225 NA other upstream 45582 24073405 ~ 24074448 (+)
G1717785 NA other upstream 863218 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 1019221 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 1097266 23014617 ~ 23032420 (+)
G1717520 NA other upstream 1240107 22820752 ~ 22879923 (+)
G1719268 NA other downstream 15366 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1491418 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1515937 25636335 ~ 25636589 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G357421 NA non-coding CI01000150 null 1468860 ~ 1469281 (+)
striped catfish (Pangasianodon hypophthalmus) G57627 LOC107562619 non-coding NC_047598.1 CM018544.1 643704 ~ 753893 (+)