G1719267


Basic Information

Item Value
gene id G1719267
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24134085 ~ 24135639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1969707
AATTAGGCCTTCCTCAGATTACAGAAGTTCCCGGAATGAAGATTTTTAAGTGCAAGGCTCCCATCTACTTTGCCAACATTGACTACTTCAAAGAGCGATTGAGAGCCACGGTGATTGAACTCGTTGTATTTCCCCTTGGCATTGTATAGATTGGGGATAGGCCTTATCATTCTACAAGCAGGCAAGATGAAAGTTTGTTGTGCGTTTGACCTTTGACATGCAGGTGGGGTTTGACTCTGTCAGAGTGTTCAAGAAGAGGAATAAGGCCCTCAAGAAGATTCAAAAACTCATAAAGAAAGGGAAACTGAGGGCGACAGAGGTACGATACAGTCTGATTTATTGATAACATTCATCTGTTCGGCTCAGAATCTTTTGAAACAGGGAATTTCCATCTTCAGTCTCCTTTCAATCCTTTACACTCATTTAGTTTTGCTCTGTAATGTGAGCTCCAGTACCTGGTAACCAGTTAGGATTTTATGATTGGTTGTGGAGCTACATTTGACTTGATTGGTTGAACCTCCGTTCCCCCAGACCGGGGAGGTGGTATCCGAGGTTTCCCTGGGTGTCGACAACAAGGGTTTCGAGAGCGAGCGGGACAGTGGGCGGGAGCCCGGGCAGGTGGAGGTCCATGTGGATTGGgccatggagctgccagtcagggTGTCGGTACCTAAGGTCCAGCTCCAAAGCCTGGTTGGACTATTCAGCCGTGTCCTTCCTAGACGTGGTGGCCGTCAAGTCCCTCAGACAGGTGGGGCGGACTCTACTACTGGTACCATCCATATGATATTCTATAGAATAGATTTAACAGACTACAGTTCATTCAAAGACAAAAGATCCCTTACTACAGTGTTATAGTGAGTCATCTTTCTGACATAATTTGAACTAGTGATCTACTGTATGACGAGGCATCATGTCACAGCTTATACACAGTGCCCCAGCTCATGACAATGCACAAATGACACAACTAAAGGAACAAATACCCTCTGTATGGTTCAATGGAGGTCGATGACGttgaagatgagggaggatgatttttttttttatgaacatggccttattactatcacagcatattggatgattgtcattcatattccattcacccagctcaatgtaacagcgataggtttaggctactacatgatacaaaACGTTTACCTATACCCATCAGGACAGTTTACAACACTGATCGAGAGAAAAATGAgaataatcaaggtgacagacaatgacacattcaatactgcatCGCAAAATCTTGCATGCATCTAGCTGatttagggtgtaatcattagtcaaaCAGTTGCAAATTAGATATTCTTTTGGACAAATGTAGGTATGTTTATCCCTCTTTCGTTACGTTTGCTTCCGTTTACGACACGTTTTTTTCAACAGAATGGGTGGAATGAATACagccctgatcacacgcaaaaacagttcactttcatagcagtcacatacaaacagcatgatcattttgcCAGTTGTATAATTCCTTTTCGCATCTacacgctctctttctctcaccttttcccttcgcttgtggacatCAGtg

Function

NR:

description
pendrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1969707 True 1555 lncRNA 0.43 1 24134085 24135639

Neighbor

gene id symbol gene type direction distance location
rpap3 LOC106609438 coding upstream 148182 23976673 ~ 23985903 (+)
LOC110500082 LOC106609433 coding upstream 197526 23910005 ~ 23936559 (+)
LOC118943007 NA coding upstream 230398 23896968 ~ 23903687 (+)
LOC110500079 LOC106576259 coding upstream 342778 23733010 ~ 23791315 (+)
LOC110500077 etv6 coding upstream 402033 23710269 ~ 23732052 (+)
LOC110500093 LOC106609369 coding downstream 11404 24147043 ~ 24157840 (+)
LOC110500095 LOC106609365 coding downstream 40540 24176179 ~ 24190708 (+)
adm2a LOC106609361 coding downstream 142158 24277797 ~ 24294858 (+)
LOC110500097 LOC106576231 coding downstream 180280 24315919 ~ 24321712 (+)
LOC110500099 LOC106609356 coding downstream 231188 24366827 ~ 24374963 (+)
G1719266 NA non-coding upstream 446 24133358 ~ 24133639 (+)
G1719261 NA non-coding upstream 12432 24121357 ~ 24121653 (+)
G1719259 NA non-coding upstream 13687 24120030 ~ 24120398 (+)
G1719197 NA non-coding upstream 74129 24038935 ~ 24059956 (+)
G1719194 NA non-coding upstream 96380 24037456 ~ 24037705 (+)
G1719269 NA non-coding downstream 1627 24137266 ~ 24137614 (+)
G1719277 NA non-coding downstream 29003 24164642 ~ 24164864 (+)
G1719278 NA non-coding downstream 29424 24165063 ~ 24165387 (+)
G1719281 NA non-coding downstream 35178 24170817 ~ 24171023 (+)
G1719463 NA non-coding downstream 133727 24269366 ~ 24269623 (+)
G1719225 NA other upstream 59637 24073405 ~ 24074448 (+)
G1717785 NA other upstream 877273 23256126 ~ 23256812 (+)
ruxf LOC105021811 other upstream 1033276 23098972 ~ 23100823 (+)
LOC110500038 LOC106609436 other upstream 1111321 23014617 ~ 23032420 (+)
G1717517 NA other upstream 1282678 22849892 ~ 22851407 (+)
G1719268 NA other downstream 125 24135764 ~ 24136323 (+)
G1720836 NA other downstream 1476177 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1500696 25636335 ~ 25636589 (+)

Expression


Co-expression Network