XLOC_003662


Basic Information

Item Value
gene id XLOC_003662
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40220055 ~ 40434080 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008674
ggggtggtaccttttaaaaaggtacacatttgtacttaaagggtccatattggtacctcaaaagtatatattagcacctaaaaaatttaagaggaacacttttgtactttttaggtattaatatgtaccctcgaggtattaatatggaccttttagatacaaatttgttgaaaaggtaccaccccagtgacagctcacgtacctttatttctgagagtgtatacatATCTGTAACTGTCTctggcaaaaaaacaacaacttggcAGAGCAATACATTCAACTTCTATTGTTATGTTTAAGTTTGACAAAGTTGTGTTGTATCACAGGGTTAATTTCTCATTTCACTCACAAGATTACTCATAAAAatggtataaaatataaaaaacaaaccaacagaATGTCAGTTTGTAATGGAGGTAGAGAAAATAACCACTAGGTGGTGCACACTTCATTCATCTGAACTAATCTACACTTCGGGAGCATTTTATGATCCCAATGTTTGTCAATTACTAAATGAAGTAAAGATATAAATAATTACACTTCACTAATGTACAGAATCAAGACTAGAGGCCGACCAATATATCAGTAAGACTAATATTTGGTATTATTAAATGATTCTCATTACCTCTGCATAACCTGTTTGGTGAAATGATTTGCAGAATGGCAGAAAGTCTGATTCATTTTGTTAACTGATAATCTGAATGCCCTGGTAATTAACTTTGTGTCATTTACTCtaatcaaataaacaattaaatcagACTTCAACCATCCTGACTTCTTAAAAACATTCATCTGCACTAGAGTagcaatgtacactgtaaaaaaaaatataaaaaatattggttactttaaaagtgagtaaacccattggttttgaagcaattagttgactttacttaaaaaaacactgggtttactcactttaagtaaggCCAACTAATCTCTTACTAAACAATGCactcaaatatattttttgctcatttaaactacttatttaaaacgagctgaaaAAACTATTCTTCAAATTTCATTAggacagcttaattttttttatgattaaaccacataaatttattaaaagtgttgaattaatcaatttgtgttgggacaacatgaatgaattgtgtggaaccctgcattttttacagtgtgggtttgctacatttttttgagtcaacttaaactctgctgctatttgggggtttccgcctggattttgccaacccaaatttaaaagcttcccaaatccacatgcagaggtgtaaatgcaaaaatttggtatcattttaaaggaaaccctttgaattttcataaaacactattgaaagtgtttaaaataactgtatatgttgtctgtgttataataaacacctaaaatgaggagctttgtgtgtgtgttttttattaacTCAAATTTAAAAGTGTACCTTATAGGTTCTGTGTAGTCTTGCTTGTTGTAATTAATTTTTGTGGTTCCTGCACacgtctgtaatcataggaaaaaagaaaaatgtctctactatAATCTATGCAAacgttattgcattccaactgatgagaggtgctgtacaagccacagggatcgatcattgttttcatatttcactattcttttgtttgatcaaacataattcactgtgtttggaccacatcagacatataaaaggattacttatgcacatcacatcaaaaacagaggagaatggccctgaagcgcacagcataagatAAGAGATggcagctgtctgtgctatctggggctgcttagtgatcataaatgtattgttttcacttctgcgccatgaaaGTACacgattcattcagcaactgtttgatatgtgaaaataattcagtaaaaagaatgctagaaccatatgagcaccggcaagagctttcatttgagctataacttgtacatttgtcatatgaaaatgaaccaatgtaaaatacctagctcgggcatccaaaatattgtgtttttaagtgtaaataacttttatacagtaaaataaaaaccaaagtgatgcatatgtgcatgaaatatagattctacactttcaaacaaaaccacttaagggggtctggtgcaatgcttaAAATCTTAAAGTGAAAGTTGATGATGTCACGGACCCCAGTACCAGCTCCGCGGagtttaaaaagtgagtaaacccgttgctttttaagcaattagttgactttacttaaaaataagcTAACCcactgcttttaaagtgattagtttactaAAAATTAAGTAATCTCATTGCCTTAAAATGATCAAGTAAATGAATTAAGTGTATAATTCTAAAATTTACTTTACATCAACTTAACCATTCCTAGTTACAACAGATTTACTCAAGTAGTCGGCTTGTTGCTTCTAAGGTgatggatttactcacttttttaagtgaaGCAACTAAACACGTTTTACCCTAATCTTAACCTGTAATGATACAAAACCTTTTTAACATAATGcaatatatattacaatacaaaGTCTTCTTAAACCCCTATTTATGCACTCAATGCACTCAAAAGTTCCTAAATGCAATGTAATCTCAGCACATAAATTCTGTCCATTAATTTAGTCAAACATCCAATTAGAAGACatcaaatgaactgaaaaaaatacttattgaTTAAACAGCAATACAAACCTTCAATCAATCAAAGTGCAAATAAAAGTGCAATACATGTTCCTGTGTTTAACAGTACTTTGCATAGAAGTATTTAGCAAATGTCTTTATCTGAGGGTACACAATTGATCATTATGAAGTAAGACTTGAACTAAATGAACTAAAACACCAATTAGCTCTTAAACAGTAACATGAGCTTATATATATTTCGCAACAAGAAAAATGCCCTTTTTATCCTTGTTTAGCATGAAATGCATACGAAATTCtgtattaaaaaaatcaattagtGCACAAAACATTAACTGGTACTAAAGTAGAAACAAACATCCAGTTTAACCCAGTGTATTATTATATTGCATTCAGATAGTTTACATTTAAtcaatttgtttgttaaaagcaTAACCACAATACACTGACTGATGATAAAAAAATACTTatctattatgtatatataataataataatgcaatatatGCAATTTTGTTCATCAAAGTTTAACATTATTTTGCATTCAGATATTTGGTAAATGCATTAATCCTAAGTGTAGACGTTTAACCAGACACCAATCAATATAAAAGCAGATAATTAGCCTTTAAATAGTATACTGAGAGCCAAGTCTAAATTAAATGTCCTTTCTTGTTTATGTTTGACATTAAATTGCAGTTAGGAATCTCCCAACCCCTTTAAACAAATGAATCTTTCAGCAACTctgctcttaaagggacagttcacccaaaattaaccttccatcatcatttactcttgttccaaacctgcttgaGTTTATGTCTTATGTTGAATACAGGGGAAAACATACTGAAGAATGCATAAAAGACATCCATTGAACTATTTGAGTGTGAGTAAACGGTCAGTTTTAAGTAAACCGTATCATTAAGACATGAAATGGTTATAAAACACTTATTTACATGGCATACTATTTTACAATGACAGGACACACCAAGCCATTTGTCGGCTGTTGAGCTTTGTCAGTCCGGGGAGTTGGTTTGGTGACCCACACATCGCCTCACAACAGGTTAACATTAGAGCAATTCATCATGTCGAATGGGCATTAGCAGAAGAGAGCACTCTGATTGGTTATTTAGCGCGACTGTGACGTAGAGAAGTGACGTAGCAAGTAAAGAATTcaagtgaaaaaagaaaataaagacattatCAAGTTTGAGAAATATTTGCACAAGCGAATCCAGCGGCAATTACAGTGATAATGGAGCTtaacactgctttgtttacactgtctGTGTGTGCAGAAGTTCAAGAAAACTGACCCTGCTGCCCCCTGCGGAGCGGAAAGACACGTATTCTTGCACAGGTGCAGAACATGGTTCTTCTTTGAGTCTGCTttttgtttggtgtgttcacacACAGATTTTTTGTCCAGACGCAATCCAACGTGAGGAGACAACAGAGCTTCATTGGTGCTGCTTGTTTGGCATCAGCTTGCTGTGTCCCGGTTGGCCCAATTCAGCATGTCCAATCATCCGTTTGGTGTGGTCACAAACAGTTTTTTGGTCCAGACGTGATCCAACACGAGGCGACAACAGTTCGGTTTCATTGGCGCTAGTTGTTTGGTGTCGGCTTGGTTTGTCCCGGTTGGCCCAATTCAGCAAGTCCAATCATTCGTTTGGTGTGGTCACGaacagctttttggtccagatgtAATCTAATGCGAGGCGAAAACACAGATTTAGTTGGTGCTAGTTTTTTGGCGTTAGCTTGGTGTGTCCTGGTTGGGCCAATTTATCATGTCCAATCATCCGTTTGGTGTGGTCACGAGCTGTTTTTTGGTCCAGACGCAATCCAACACGAGGCAACAACAGTTCGGTTTCATTGGTGCTAGTTGTTTGCCGTCAGCTTGGCGTGTCCCGGTTGGCACAATTCAGCATGTCCAATCCtttgtttggtgtgttcacacacagctttttggtccagacatAATCTAATGCGAGGCAAACACACAGATTTAGTTGGTGCTAGTTTTTTGGCGttggcttggtgtgtcccagTTGGTCCAATTCAGCATGTCCAATCATCCGTTTGGTGTGGTCACGAGCTGTTTTTTGGTCCAGATGTGACAACACAGTTGGGTTTGGTTTTTCACTAGCAGTTTGGCATTGGGTTGGTGTGTACCCGCCCATGGGGTTAACCTAGAAGGCTCTTTGGCCAAGTCAAATCACTGTGGGCAGGAGACCACTCTTACGGGttattcaaaaaataaatcagaCCATGAGTGTGACATAGGGAAGTGACGAAGCGAGTAAACATTTCAAGccaaaaaaacatcacaaagaGGCCGTAATTTCGCTATATTTCACACATTTCTTGCAAACGATGTGAATTATCAAACATATTTGCATGAGTGAATCCCTCTGTGTTGAGTGACAACTTCTGTAATAATGGTACTgaacgctgctttgtttacactttgGCTGAGCACGTTGAAAGTTAAGTTTCCCTTTGCAGAACAAGAAAACCGACACTGCCTCCTACTGGCGTTACTACTGGCCTACTACTCGTTCTAGGCACAGAACGAGGCTCTGGTTTTACTAGACTTTGGTGtgtttgatgcatttacatgcaggTTTTTGGTCCAGATGCGATCCAACAAAAGGCAACAACACAGTTATGTTTCATTTGTGCTAGCTGTTTGGCATCAGCTTGGTGTGTTCCGACCCGTCGGGTTAACATCGGAGCTCGTTGGTTCAATTCAGCATGGCAAATCGGCGTCAGCTGAAGGAAATCAGAGCGCGGGTGTGAAGTAATGAAGTGACAcagcaagtaaacaattcaagtcaaaaagaaacacaaagagGCCGGCTGTAACTTCAGTATATGTctcaaatatttgtaaatgataCGAATTATTAGATTGTCAGATATATTTGCATGAGCGAATCCCTTCGTGTTGAGTGACCATTACTGTGATAACACTGCTCTGTTTACTCTTCGACTGTGCACGTCAGACGTTCAGTTTCCCATTGTGGAATGAGAAAACACACACTGCCCTCTGCAGAGAAGAAAACACATCCTCTTGCAATGCTAGTTGTTTGGTGTCAGCTTGGTGTGTTTCAGCCCATACAATACAACATGTTTAAAGCAAATGCATTGATGTGAATGGAAGCGTGTGATGTTCAGTATAGGAACGGGCCACTCTCCTGCACCGACTTCAGCA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0120114 Sm-like protein family complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008674 True 5826 lncRNA 0.37 2 40220055 40434080

Neighbor

gene id symbol gene type direction distance location
XLOC_003661 si:ch211-193i15.1 coding upstream 4501 40208239 ~ 40215554 (+)
XLOC_003660 si:dkey-264d12.5 coding upstream 51677 40148181 ~ 40168378 (+)
XLOC_003659 NA coding upstream 103409 40111481 ~ 40116646 (+)
XLOC_003658 si:dkey-264d12.1 coding upstream 147754 40032790 ~ 40072301 (+)
XLOC_003657 per3 coding upstream 198975 39959039 ~ 40021080 (+)
XLOC_003664 mmel1 coding downstream 96668 40530748 ~ 40605868 (+)
XLOC_003665 AL954137.1 coding downstream 139863 40573943 ~ 40578255 (+)
XLOC_003666 AL954137.2 coding downstream 183816 40617896 ~ 40641787 (+)
XLOC_003667 slc45a1 coding downstream 215332 40649412 ~ 40674070 (+)
XLOC_003668 errfi1a coding downstream 378510 40812590 ~ 40847615 (+)
XLOC_003369 CR854846.2 misc upstream 24096973 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27508059 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27525792 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27534456 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27540027 12679732 ~ 12680028 (+)
XLOC_003655 NA non-coding upstream 293183 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 740788 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 929421 39287369 ~ 39290634 (+)
XLOC_003652 NA non-coding upstream 936079 39262536 ~ 39283976 (+)
XLOC_003669 NA non-coding downstream 430875 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 455100 40889180 ~ 40889294 (+)
XLOC_003671 NA non-coding downstream 457601 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 463246 40897326 ~ 40899889 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 758249 41192329 ~ 41201272 (+)

Expression


Co-expression Network