G1719512 (LOC106576230)


Basic Information

Item Value
gene id G1719512
gene name LOC106576230
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24362118 ~ 24362462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1970002
TAGCCATTGATCCAGCGCTGGCTGGACTGGCCGTACCCTCAATGACTCCGCCATAGCCATTGATCCAGCGCTGGCTGGACTGGCCGTACCCTCAATGACTCCGCCATAGTCATTGATCCAGCGCTGAATCACCTTGGCTCATAGCTCTGCCATAGAATCCACTTCTACATACTCTTCTatcaactcctcctcctcctccgttccCCTCAGGATGCCGCACATCTGCAGCTCGCTAGCCACCACCGCCAGGAACAGCGGCAGGCGGTCCATTCCCAGCCTGGTAGTGGTTCCCAAGAGGAATTGCAGCAGGGTCCTGTGCGGCTCCTGGCAGGGCAGGGTACGGTG

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein GNN-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1970002 True 345 lncRNA 0.59 1 24362118 24362462

Neighbor

gene id symbol gene type direction distance location
LOC110500097 LOC106576231 coding upstream 40406 24315919 ~ 24321712 (+)
adm2a LOC106609361 coding upstream 67260 24277797 ~ 24294858 (+)
LOC110500095 LOC106609365 coding upstream 171410 24176179 ~ 24190708 (+)
LOC110500093 LOC106609369 coding upstream 204278 24147043 ~ 24157840 (+)
rpap3 LOC106609438 coding upstream 376215 23976673 ~ 23985903 (+)
LOC110500099 LOC106609356 coding downstream 4365 24366827 ~ 24374963 (+)
trnay-gua-63 NA coding downstream 20075 24382537 ~ 24382624 (+)
trnay-gua-64 NA coding downstream 20686 24383148 ~ 24383235 (+)
LOC110500102 ankrd16 coding downstream 20979 24383441 ~ 24384781 (+)
LOC110500103 LOC106609353 coding downstream 26850 24389312 ~ 24401010 (+)
G1719511 NA non-coding upstream 228 24361643 ~ 24361890 (+)
G1719508 NA non-coding upstream 10568 24351194 ~ 24351550 (+)
G1719507 NA non-coding upstream 11111 24350695 ~ 24351007 (+)
G1719493 NA non-coding upstream 51692 24310046 ~ 24310426 (+)
G1719486 NA non-coding upstream 58916 24302782 ~ 24303202 (+)
G1719514 NA non-coding downstream 3371 24365833 ~ 24366066 (+)
G1719529 NA non-coding downstream 40599 24403061 ~ 24403271 (+)
G1719520 NA non-coding downstream 45800 24408262 ~ 24408830 (+)
G1719524 NA non-coding downstream 49048 24411510 ~ 24412412 (+)
asb13a.2 LOC106609355 non-coding downstream 51404 24405619 ~ 24414681 (+)
G1719268 NA other upstream 225795 24135764 ~ 24136323 (+)
G1719225 NA other upstream 287670 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1105306 23256126 ~ 23256812 (+)
G1720836 NA other downstream 1249354 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1273873 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1675840 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1967312 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2459185 26821647 ~ 26821935 (+)

Expression


Co-expression Network