G1719634 (LOC107575789)


Basic Information

Item Value
gene id G1719634
gene name LOC107575789
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24457647 ~ 24458033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1970130
gatttcagtccttcacgacgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccatgtagttctgggctgattcctcaccgttctcatgatcattgcaactccacgaggtgagatcttgcatggagccccaggccgagggagattgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggccttgtgtaggtctacaatcttgtccctgacatccttagagagtcttggccatggtggagagtttggaatctgattgattgcttcttttatacaggtaacaaactgagataaGGAGCACTCCCTtaaagag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1970130 True 387 lncRNA 0.46 1 24457647 24458033

Neighbor

gene id symbol gene type direction distance location
asb13a.2 LOC106609355 coding upstream 43468 24405619 ~ 24414681 (+)
asb13a.1 LOC106609354 coding upstream 52109 24401158 ~ 24405538 (+)
LOC110500103 LOC106609353 coding upstream 56637 24389312 ~ 24401010 (+)
LOC110500102 ankrd16 coding upstream 72866 24383441 ~ 24384781 (+)
trnay-gua-64 NA coding upstream 74412 24383148 ~ 24383235 (+)
mkln1 LOC106609349 coding downstream 117775 24575808 ~ 24603395 (+)
LOC110500922 LOC106576224 coding downstream 176644 24634677 ~ 24637555 (+)
LOC110501038 NA coding downstream 195194 24653227 ~ 24657324 (+)
LOC110500114 LOC106576221 coding downstream 201794 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding downstream 262935 24720968 ~ 24723685 (+)
G1719632 NA non-coding upstream 2026 24455326 ~ 24455621 (+)
G1719615 NA non-coding upstream 21595 24435644 ~ 24436052 (+)
G1719612 NA non-coding upstream 24333 24433044 ~ 24433314 (+)
G1719596 NA non-coding upstream 39410 24418011 ~ 24418237 (+)
G1719644 NA non-coding downstream 15016 24473049 ~ 24473359 (+)
G1719647 LOC106609352 non-coding downstream 27630 24485663 ~ 24486295 (+)
G1719657 NA non-coding downstream 37265 24495298 ~ 24495524 (+)
G1719695 NA non-coding downstream 72123 24530156 ~ 24594390 (+)
G1719705 NA non-coding downstream 106224 24564257 ~ 24565340 (+)
LOC110500097 LOC106576231 other upstream 140109 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 162850 24277797 ~ 24294858 (+)
G1719268 NA other upstream 321324 24135764 ~ 24136323 (+)
G1719225 NA other upstream 383199 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1200835 23256126 ~ 23256812 (+)
G1720836 NA other downstream 1153783 25611816 ~ 25612268 (+)
G1720853 NA other downstream 1178302 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1580269 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1871741 26324744 ~ 26333964 (+)
G1722079 NA other downstream 2363614 26821647 ~ 26821935 (+)

Expression


Co-expression Network