G1720172


Basic Information

Item Value
gene id G1720172
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24709381 ~ 24717413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1970744
acatgacaggtgtatagtatctacagtctaccagaggaccagaaacatgacaggtgtatagtatctacagtctaccagaaaCATGACAGGTGTAtattatctacagtctaccagaaacatgacaggtgtatagtatctacagtctaccagagaacctgacaggtgtatagtatctacagtctaccagagacatgacagatgtatagtatctacagtctaccagagacatgacagatgtatagtatctacagtctaccagagacatgacagatgtatagtatatacagtctaccagagacatgacaggtgtatagtatctacagtctaccagataTATGACAGGTgtttagtatctacagtctaccagagaaccagagacatgacagatgtatagtatctacagtctaccagagacaTGCCAgatgtatagtatctacag
>TU1970742
ggtgtttagtatctacagtctaccagaggaccagatacatgacaggtgtttagtatctacagtctaccagagacatgacaggtgtagagtatctacagtctaccagaggaccagagaCATGACAGGTATATAGTATCTAGTCTACCAGAGACATGccaggtgtatagtatctacagtctaccagaggaccagagaCATGACAGGtgtatagtatctacagtctaccagagacatgacagatgtatagtatctacagtctaccagaggaccagaaacatgacagatgtatagtatctacagtctaccagagacatgacaggtatatagtatctacagtctaccagagaacCAGATACATGACAgatgtatag
>TU1970739
ggtgtttagtatctacagtctaccagaggaccagatacatgacaggtgtttagtatctacagtctaccagagacatgacaggtgtagagtatctacagtctaccagaggaccagagaCATGACAGGTATATAGTATCTAGTCTACCAGAGACATGccaggtgtatagtatctacagtctaccagaggaccagagaCATGACAGGtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagatacatgacaggtgtatagtatc
>TU1970740
ggtgtttagtatctacagtctaccagaggaccagatacatgacaggtgtttagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagaaacatgacaggtgtatagtatctacagtctaccagaaaCATGACAGGTGTAtattatctacagtctaccagaaacatgacaggtgtatagtatctacagtctaccagagacatgacagatgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagatacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagatacatgacaggtgtatagtatc
>TU1970745
ggtgtttagtatctacagtctaccagaggaccagatacatgacaggtgtttagtatctacagtctaccagagacatgacaggtgtagagtatctacagtctaccagaggaccagagaCATGACAGatgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagatacatgacaggtgtatagtatctacagtctaccagagacatgacaggtgtatagtatctacagtctaccagaggaccagatacatgacaggtgtatagtatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1970744 False 439 lncRNA 0.40 2 24709381 24716919
TU1970742 False 371 lncRNA 0.42 3 24711290 24717413
TU1970739 False 331 lncRNA 0.43 2 24714826 24717413
TU1970740 False 477 lncRNA 0.41 4 24714826 24717413
TU1970745 True 369 lncRNA 0.43 3 24714826 24717413

Neighbor

gene id symbol gene type direction distance location
LOC110500112 LOC106609347 coding downstream 62161 24643955 ~ 24647220 (-)
LOC110500111 LOC106609346 coding downstream 65517 24640090 ~ 24643864 (-)
LOC110500110 podxl coding downstream 86786 24604892 ~ 24622595 (-)
LOC110500107 NA coding downstream 174631 24521804 ~ 24534750 (-)
LOC110500106 LOC106609352 coding downstream 192177 24481140 ~ 24517204 (-)
slc41a2b LOC106609341 coding upstream 37368 24754781 ~ 24787447 (-)
LOC110500116 LOC106609340 coding upstream 76193 24793606 ~ 24857940 (-)
LOC110501039 LOC106609337 coding upstream 158101 24875385 ~ 25103277 (-)
LOC110500122 gata3 coding upstream 1039378 25756791 ~ 25774311 (-)
atp5f1c LOC100305137 coding upstream 1149188 25866601 ~ 25871734 (-)
G1720156 NA non-coding downstream 17356 24689406 ~ 24692025 (-)
G1720104 NA non-coding downstream 82152 24578713 ~ 24627229 (-)
G1720051 NA non-coding downstream 242853 24466099 ~ 24466528 (-)
G1720042 NA non-coding downstream 261871 24447268 ~ 24447510 (-)
G1720033 NA non-coding downstream 271845 24437083 ~ 24437536 (-)
G1720186 NA non-coding upstream 28478 24745891 ~ 24746117 (-)
G1720205 NA non-coding upstream 58195 24775608 ~ 24776084 (-)
G1720233 NA non-coding upstream 115361 24832774 ~ 24833262 (-)
G1720268 NA non-coding upstream 173245 24890658 ~ 24891669 (-)
G1719407 NA other downstream 564033 24137726 ~ 24145348 (-)
LOC110500092 LOC106609371 other downstream 643031 24060587 ~ 24066411 (-)
LOC110500089 LOC106609371 other downstream 665753 24037871 ~ 24043628 (-)
G1718713 NA other downstream 1126531 23582575 ~ 23582850 (-)
LOC110500069 LOC106609440 other downstream 1132631 23574474 ~ 23586547 (-)
LOC110500148 LOC106609286 other upstream 1584329 26301474 ~ 26310640 (-)
LOC110501044 LOC106609327 other upstream 3208004 27924301 ~ 27929621 (-)
LOC110501045 LOC106609328 other upstream 3365400 28002248 ~ 28103013 (-)
G1723535 NA other upstream 3513110 28230523 ~ 28230880 (-)
G1723713 utp20 other upstream 3652205 28369618 ~ 28371062 (-)

Expression

G1720172 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

G1720172 Expression in each Bioproject

Bar chart with 9 bars.
G1720172 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network