G1719826


Basic Information

Item Value
gene id G1719826
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 24875539 ~ 24935910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1970355
TCGGAGACAGAAGCAAATAACTGCATCACACAAGAACATACGTTTACAAAAATAATTCTGACTGCTTCAGCTACACAGTTAGTTCACAGGGGACAGAGAAACCAGAAAAATCTCAACAGTTAAAAGCAAAAACCTCTAATTAGTTTATCTTTTTATTAAACTAATACATTAATCCACTGAAGGTGACTAAATATTTATATTCCTAATTGTCTTATCATGTAGACGTCACAATACAGAAGTTAAATGAAACttaccgtttttttttttttgtatagacAAATGGCTATAACCATGTATAAGCCAAAAAGAAACCAACACTCACCTAACCCCTCTTTGCGAAAATAACAACACTGAAGTAAGGAAAATTAAGGAGTTAATTAATTAAAGAAACCAAGCCAAAGTTCTTCTAGAAAATCGTATATTAAAAGACAACGTTCTTGATGCCAGCTATAAATCATACTCGGGGAACCAGTCAACAAAGGTCAGGCCACATCATGAGGCCAGACAGGTTTGTTTTTCTAatagttttttttgtttcctttaaTCTCCAGTATAAAAAGTTTCACTGGTACAAAATGCATAAGTACAATCATTTGTAGAAATAGGAAAGCCTGCATTTTTTGTACTTTTCCAATCCCATCCAATGACAGATTTCGAAGTGTTGTCAAACAAACATACATCACGCTTACAGAATCCACTGAAATGCACTGACTTTGGCTTCTCTCAAGACAATACTTAAAACTATTGAAATCCTTTAGAATCAAACAAAATTATATTAATCTACAGACAACAAGCTCTTTAcggcacagaaagagagagaaaacaaacatTTCCCCCCCAAAACTAGACATAATAAGCCAAAATGCAAAGAAACTACAAGTTGTTTTTTTCCTTTAAAATGTAATTGTTTGATAAATAGCACTTTAGATAATTAAGAAAGTAAGAGAACAGAGAACGGAACAGTGACAAGATTGAAAGATTACAACAAGCATCGGTGATGACAGCCCCCGAGATGTGAGGCACTCAACAGACATTCCTGTCTAACGGTCTGTCTGCGGAGGACACTCTTGTGCTTTTTCAGAAACATCTAACAGACTGCAACTTCAATCAGACTACACTGTGCCAACCCgcgctgtgtgtgtatgtgtgagtgagagatTTGGGAATTGGGGGATGCTTAAGTTttgtaaaaacacacacatgtCCATACATTACCATCTCCCAAAGTATAAGTAGTTGGCTAAGGGATGAACCCGAAAACCAAAGCCTCTACGCCTGCAACTCATTATGCTGCACCGTGAGTTgatgtaactctgttgtctgtttATGTTACCTAATGTATTTAGAGTGCAAAGATGTTCCTCACAGAGAGGATTCCTGAAGGGTCTGAGGCCTAATTGGGCAGCTGTCTTATAAGGAGACTACGATCAGCTCACGTTAATGACAAAATGATCTATTAACACTGTGTCGTATGACATATTGGCAATCCTGATTACTTTTGTGCAGGTAGTTAGAGCTGTTTTTATggcatttggggcggcagggtagtggttagagcgttgggctagtaaccgaaaggttgcaagttcaaacccccgagctgacaaggtctgtcgttctgcccctgaacaggcaagtaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaaaaacaCTTCACAGACAAGATGGCTGCCACACCTCTCTCAATCTCAAATCaagaggctttattggcatgggaaacatacatttacat
>TU1970359
TCGGAGACAGAAGCAAATAACTGCATCACACAAGAACATACGTTTACAAAAATAATTCTGACTGCTTCAGCTACACAGTTAGTTCACAGGGGACAGAGAAACCAGAAAAATCTCAACAGTTAAAAGCAAAAACCTCTAATTAGTTTATCTTTTTATTAAACTAATACATTAATCCACTGAAGGTGACTAAATATTTATATTCCTAATTGTCTTATCATGTAGACGTCACAATACAGAAGTTAAATGAAACttaccgtttttttttttttgtatagacAAATGGCTATAACCATGTATAAGCCAAAAAGAAACCAACACTCACCTAACCCCTCTTTGCGAAAATAACAACACTGAAGTAAGGAAAATTAAGGAGTTAATTAATTAAAGAAACCAAGCCAAAGTTCTTCTAGAAAATCGTATATTAAAAGACAACGTTCTTGATGCCAGCTATAAATCATACTCGGGGAACCAGTCAACAAAGGTCAGGCCACATCATGAGGCCAGACAGGTTTGTTTTTCTAatagttttttttgtttcctttaaTCTCCAGTATAAAAAGTTTCACTGGTACAAAATGCATAAGTACAATCATTTGTAGAAATAGGAAAGCCTGCATTTTTTGTACTTTTCCAATCCCATCCAATGACAGATTTCGAAGTGTTGTCAAACAAACATACATCACGCTTACAGAATCCACTGAAATGCACTGACTTTGGCTTCTCTCAAGACAATACTTAAAACTATTGAAATCCTTTAGAATCAAACAAAATTATATTAATCTACAGACAACAAGCTCTTTAcggcacagaaagagagagaaaacaaacatTTCCCCCCCAAAACTAGACATAATAAGCCAAAATGCAAAGAAACTACAAGTTGTTTTTTTCCTTTAAAATGTAATTGTTTGATAAATAGCACTTTAGATAATTAAGAAAGTAAGAGAACAGAGAACGGAACAGTGACAAGATTGAAAGATTACAACAAGCATCGGTGATGACAGCCCCCGAGATGTGAGGCACTCAACAGACATTCCTGTCTAACGGTCTGTCTGCGGAGGACACTCTTGTGCTTTTTCAGAAACATCTAACAGACTGCAACTTCAATCAGACTACACTGTGCCAACCCgcgctgtgtgtgtatgtgtgagtgagagatTTGGGAATTGGGGGATGCTTAAGTTttgtaaaaacacacacatgtCCATACATTACCATCTCCCAAAGTATAAGTAGTTGGCTAAGGGATGAACCCGAAAACCAAAGCCTCTACGCCTGCAACTCATTATGCTGCACCGTGAGTTgatgtaactctgttgtctgtttATGTTACCTAATGTATTTAGAGTGCAAAGATGTTCCTCACAGAGAGGATTCCTGAAGGGTCTGAGGCCTAATTGGGCAGCTGTCTTATAAGGAGACTACGATCAGCTCACGTTAATGACAAAATGATCTATTAACACTGTGTCGTATGACATATTGGCAATCCTGATTACTTTTGTGCAGGTAGTTAGAGCTGTTTTTATggcatttggggcggcagggtagtggttagagcgttgggctagtaaccgaaaggttgcaagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttccttggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtcaaataaataaaaatgactcATTACTGCTTTAGGAAATGTCAATTTGATATGCTATGGACTCAACTGAAGTTTGGCATTGGTAAGAGGGCTCTGCCTCTTGGCTGAGACTGTTGTTTTGCTGTCTCTAGTTTTATTTCCCCTGTCTGCACTTTACGAACCCTCCTCCATTTGGCTCGGTATTTCAAATAAACCTTGTTATTCTGTAAAAAGACGATGAAACGGATAACAATAAACTGTTTTATTTTCCTTGGTTGTCAGTTTGAGAGCCACACTAAATAAGAAGGTGGCCATTTTGCCTCTCTACTCTGCGTTGTGGGACAAAATGGTGACACGCTTACCCAGAGTTGGAGAAGCTGGaggtacagtacaacacagtacactTAGACTTGGCAAACACCACCTACTTACATACAGATGTTTAGATCCGATTAGACAAGTCTTTCGATACAACACTCCCTGGTTAAGGCGACTGGTGAGTTTTTGTATAAAATAGTGCTGCGTTTTGCAGACCGTAAACTAGGTTTCCAGGGAAGGGAATCGGGGCAGTTTTACAGAATACTGAGACTGACGGACAGACAGCATTGTGTCATGTAAACGGATTGACTATGAGAATCTTGACGTAATACTTTGGCATCTCAACACTGTTTTGGCCagttacactacattacacaacaTTTACAACAGGGCAAACATATTTCTGTAATAATGGTGTAATTACCAATACTGGTACATGTCCATAAGAAACTGTCAATGGAAGAAACAACAAAACCAAACAGCTGAAAATCATTCTGTACTATCAACGTTGTTTTGTCTGGATCTGGGGAGGGTTTGAGGCTTGTGTGGGAAAGTCTTGCCCTTCACTTACCTCATGTAAGCAACGCATTCATGTTGTTTGAGGTGACACATACATGACCAGCAAATAACGATGCCCCTTCCCAGTCTGTAGCAACTTCAACTAAACACTTGTCCTTGATTTAGGTTATAATGAGAGAGATGAAAATCTTAAAATAAGGCTTGACATTTGTCAAAGCGAAAGGATGAAGCGAGAGTGTTTGGAGAGAATGTGAGTGTGAGTGTTCATGTAAGGGCTTGTGATAAGGCTTTGCAGAATTCTCGGTATAATGGCTCATGtgagaactgtgtgtgtgagtgacgtGTTGATAGAGAGAGCGTGTGAACAGTAATGTAAAGACTGGTGGGCAGGAACATGGAAACTGGACTGTAGAGGCTCTCACACTCAGGGGCTCTCATACACAACAACAAAGTAAAGTCAACTGTgaggtctgcgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtagacgtgcgagtgtgtgagtgtgtgtgtgtgtatatatatatatatatgacacatGGGCACTTTTTACATCTTTACGAAGAAAAGCAAAACATGAACAGTTTCAGGCAACAAGACCACAGAATAGCAAGTTAACAAACTCTTTTTTTAAATCTATATTTTTACATATGAGGGATCCATACAAAACACTTAATAAAATACCCATGTTATCAAATAATTTGACCAGAAATACACTGACGCGCTATAGACAGAATGTACCTTCAAGTTTTGGCACTAAACTCCACCGATCTTGTCTTTTTTTTCTTTATAAGAAAAGAAAATTACATTATAATGAACAACAAAACACATCTAAATATTGTTTCCCACGATAGAAATAAAATCATATTAACATTGATGCTTCACAAGCCgacatgttatatatatatatatttatatattcatatatattttttttttaggaatTTTATATAGCTAATTTACCCAACAAGAAATTTAGCAAATCGGGACTGCTTAAAATAAAAAAGACAAAACAATTATAATAGTATTCATATGAAAGGCTTTGTCTATTGTTCAagtaaacagattttttttttttgtcttctctTTAAAAACATGAGACACTTAAGACCGTTAGACTTGTAATGAAACCAAAACTAAACTCACAAGAAGCACCAACGTTAACGCGGGTTACAGGTCATTTCCTCTTTTTTTTTCGCTCTATAATTTAAACAGTAGAAAATATAGGTCATTTCTTTATCATGTGCATTTAAACCACGGATTGTCTATCTGTGAGTCAGTTCAGCAAAAGGTGACACGTAGGTAGCATTTCTCCCCCCAAACAGGGCAAGTctttttttgttgacatttttGTAATACCTTAAACTACTCTAGAAAAAAGTGGTTCTATATATACTTTAATGAGAAACAGAGCCACTTAAAATGGCCTTATCAAAAAACTTTACACTGCctgaaaaatgtaaaaacaattaCAGAGCTCTGAGAGAGTCTAATATTGATCAGACAGTTTTTATTCAGAACTGTTTGGAAGTAGTCTATTTTTCATGGACACCGACAGTGTCTGCTTCTGGCCTCATATTGCCAGTGGAGCCAGAAACAAGACAGCATGCCAATCCCTGTGCTGAACTTTCAAGTTTACTTTAACTGAAAAAAGGAGCAAAAAATGAAACCCAACATAAAAGAAGGAAACTAAACATAACTAAATGAATCTAAGGGAAATCATTTTGCCACGGGGTTTTTCTGTTTTTAAAAAGaaacgttttgtttttgtctGTAAGAGTTCAGTCTTTTTGTATGAATGATGCTATACTTCTTCACATTgattcgcccccccccccccccccccctcctccctcccgccctccttcATCCACAATGTACCCCATCCACCCCACCTCCCCAAAATAGAACATGAGGTCACATGCAAAAAAAGTCCAAAAAAGGTCAAGCTAAGTTCAAAAGGTCAGTAGGCGGAGACCAGGTTATGATCAGGTGAGCTCAGAAAAGACATCAGAAAACAATGACGGGACGATGAGACTTTTTTTGTATAATTTTGTTTTTGGACGCCAGGCCACAGAGACATGCTAGGCAAACGATGAGCTAACAGGCATGGAGATGGGTTCTATAGGAAGaaaacaggggagaggagagagttacacACAGGACAGAGAGCCAGGGCACCACATTACTACAGCATTAAAATCaggggaacaacaacaacaaacaacaaaacaacaatgcAAACCACCAGGCCATAATGGCAACACCACTCACTACACAATTGGCAATTTTTTTTATCTatcattatttcattttttttgtacaAAAATGATTTACAATTTGGATTAATACTAACAGACAAACTAACAGAcaaacacactatcacacactcatacacagagCACCCAAAGTTATATCCATCAGTACCACATGCTTCTAGAGAGCAAGGAGGATGGATTGTAATTTGGGAGAAACTGTTTAAAAGTTTTTGTACAGTACAAACGAACGAAACATACACGTGAACAAAAAAACGAAACGCAAGGAAAGGTTGAAATTTGACAGgtgaagtacagagagagagagagagagagagagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGGGAGCAGAGGCAGAGCGAGGTGTGAACCTGGCTCTGTTCTAGAGAATTCTACAGTTCCGAATTTCAGAAGACCACTCAACAAGGTTCTATTCTAACGGATTCTGTTCTTTGTAGGAGTCCAATAACTTAACGATAGGcaataaataaaatcattttttttctgaggcagTAAAAATTTTGtataaaaatagaactgctttttttacaaataaaatgtacAGGCCTGTGGCTTTCGCTACTTTGAATTTCTTTTTTTTATCTCTCAAGAAACATCAAGTATTTTCAGTTAACTTCCCACCCATACATTTTTTATCTTATAGCCTTCATCAGATTCTGGATGTTACTTTAAAAATGTTCTACACAATATCCCTTTCAACAAAGACCAATGTGATCTGACCCAGAAAATCATAAGTTTGCTAACATTGTTTTAGTGTGAAATAAACATTCTCCACATTAAGAAATGAAAATGACTGTCCTGATAATAATGAAATAGAGGAGTATATGGGATGCTGTCGTTGACTGACTAACAGGTGAGAGGCCACTAAGTTTTGTTTTTGAACCCTTTGTTCCATGGTGTCTGTCAGCAGGCATCAGGGGTCAGAGAAGCAGCGGTGGTTGGCCCGGGAAACCAACACCAGGAGGTCAAGGGTCATGTGCATATCGGTGCGTGGTGTGTCAGAAATGAACCCTTTATCTCAGCATTTTATCAGGCCTCAGGTTCACAAAGAGAAAAAACAAAATCATATAGGTTCTGGGTTTTTTTCTTACTCTGTTTTTGGAGTAACGAAATTCTTCTCATAACAGTATATAAATAATCACGTAGAaaattaaatatgttttacaaCTGAAAAAGCTACCGATGAtagctacttttttttttttaaagtggtaCAAAATAAAGGTGGTAATGGAAGCATTAATGTGaaagataatacaaaaaaatgataatagtaataataaataatactGCTGAACACAAAagctaaaaaaacaaaacaaataaaactCAAGGAGAAAGTAGTGtctccctctggtggtcaaatgttgtctcccccccccccctccacttccCTCCCCCAGTCCCTGTGTAGAGGTCGTGGCTCGTATGGGGACTTACCCTAGCAGTGGTAACATGGGAGCAGATAGGCCCTAGTGCTAAGATCAGTATGGTTTGCTGTCGTTCTTGGAGCGCTTGAGCTGCACCTTCAGCCTCTTCATGCCGATCTGGAAGCCATTCATGGCCTGGATGGCTGCCTGCGCCGACACGGGATTGTCATAGCTGAC
>TU1970357
TGAGGTCACATGCAAAAAAAGTCCAAAAAAGGTCAAGCTAAGTTCAAAAGGTCAGTAGGCGGAGACCAGGTTATGATCAGGTGAGCTCAGAAAAGACATCAGAAAACAATGACGGGACGATGAGACTTTTTTTGTATAATTTTGTTTTTGGACGCCAGGCCACAGAGACATGCTAGGCAAACGATGAGCTAACAGGCATGGAGATGGGTTCTATAGGAAGaaaacaggggagaggagagagttacacACAGGACAGAGAGCCAGGGCACCACATTACTACAGCATTAAAATCaggggaacaacaacaacaaacaacaaaacaacaatgcAAACCACCAGGCCATAATGGCAACACCACTCACTACACAATTGGCAATTTTTTTTATCTatcattatttcattttttttgtacaAAAATGATTTACAATTTGGATTAATACTAACAGACAAACTAACAGAcaaacacactatcacacactcatacacagagCACCCAAAGTTATATCCATCAGTACCACATGCTTCTAGAGAGCAAGGAGGATGGATTGTAATTTGGGAGAAACTGTTTAAAAGTTTTTGTACAGTACAAACGAACGAAACATACACGTGAACAAAAAAACGAAACGCAAGGAAAGGTTGAAATTTGACAGgtgaagtacagagagagagagagagagagagagagaggggggtgtgtgACAGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGGGAGGTGAGTGACAGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGggagcacagacagagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGTAGggagcacagacagagagaggtgtgtgacaGTGAAGggagcacagacagagagaggtgtgtgacaGTGAAGGGAGCAGAGGCAGAGCGAGGTGTGAACCTGGCTCTGTTCTAGAGAATTCTACAGTTCCGAATTTCAGAAGACCACTCAACAAGGTTCTATTCTAACGGATTCTGTTCTTTGTAGGAGTCCAATAACTTAACGATAGGcaataaataaaatcattttttttctgaggcagTAAAAATTTTGtataaaaatagaactgctttttttacaaataaaatgtacAGGCCTGTGGCTTTCGCTACTTTGAATTTCTTTTTTTTATCTCTCAAGAAACATCAAGTATTTTCAGTTAACTTCCCACCCATACATTTTTTATCTTATAGCCTTCATCAGATTCTGGATGTTACTTTAAAAATGTTCTACACAATATCCCTTTCAACAAAGACCAATGTGATCTGACCCAGAAAATCATAAGTTTGCTAACATTGTTTTAGTGTGAAATAAACATTCTCCACATTAAGAAATGAAAATGACTGTCCTGATAATAATGAAATAGAGGAGTATATGGGATGCTGTCGTTGACTGACTAACAGGTGAGAGGCCACTAAGTTTTGTTTTTGAACCCTTTGTTCCATGGTGTCTGTCAGCAGGCATCAGGGGTCAGAGAAGCAGCGGTGGTTGGCCCGGGAAACCAACACCAGGAGGTCAAGGGTCATGTGCATATCGGTGCGTGGTGTGTCAGAAATGAACCCTTTATCTCAGCATTTTATCAGGCCTCAGGTTCACAAAGAGAAAAAACAAAATCATATAGGTTCTGGGTTTTTTTCTTACTCTGTTTTTGGAGTAACGAAATTCTTCTCATAACAGTATATAAATAATCACGTAGAaaattaaatatgttttacaaCTGAAAAAGCTACCGATGAtagctacttttttttttttaaagtggtaCAAAATAAAGGTGGTAATGGAAGCATTAATGTGaaagataatacaaaaaaatgataatagtaataataaataatactGCTGAACACAAAagctaaaaaaacaaaacaaataaaactCAAGGAGAAAGTAGTGtctccctctggtggtcaaatgttgtctcccccccccccctccacttccCTCCCCCAGTCCCTGTGTAGAGGTCGTGGCTCGTATGGGGACTTACCCTAGCAGTGGTAACATGGGAGCAGATAGGCCCTAGTGCTAAGATCAGTATGGTTTGCTGTCGTTCTTGGAGCGCTTGAGCTGCACCTTCAGCCTCTTCATGCCGATCTGGAAGCCATTCATGGCCTGGATGGCTGCCTGCGCCGACACGGGATTGTCATAGCTGAC

Function

NR:

description
PREDICTED: CUGBP Elav-like family member 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1970355 False 1789 lncRNA 0.38 2 24875539 24935910
TU1970359 False 6525 lncRNA 0.39 3 24875539 24882258
TU1970357 True 2223 lncRNA 0.41 2 24880005 24882258

Neighbor

gene id symbol gene type direction distance location
LOC110500118 LOC106609342 coding upstream 83972 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 130655 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 151854 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 218215 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 237984 24634677 ~ 24637555 (+)
LOC110500123 NA coding downstream 832976 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 935911 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 955963 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 995680 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 1052192 25988102 ~ 26012328 (+)
G1719862 NA non-coding upstream 42381 24832400 ~ 24833158 (+)
G1719811 NA non-coding upstream 119223 24755341 ~ 24756316 (+)
G1719795 NA non-coding upstream 157994 24709915 ~ 24717545 (+)
G1719695 NA non-coding upstream 281149 24530156 ~ 24594390 (+)
G1719973 NA non-coding downstream 89292 25025202 ~ 25025696 (+)
G1719979 NA non-coding downstream 96708 25032618 ~ 25032868 (+)
G1720016 NA non-coding downstream 156931 25092841 ~ 25093079 (+)
G1720017 NA non-coding downstream 157690 25093600 ~ 25093875 (+)
G1720018 NA non-coding downstream 158605 25094515 ~ 25094720 (+)
LOC110500097 LOC106576231 other upstream 558001 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 580742 24277797 ~ 24294858 (+)
G1719268 NA other upstream 739216 24135764 ~ 24136323 (+)
G1719225 NA other upstream 801091 24073405 ~ 24074448 (+)
G1717785 NA other upstream 1618727 23256126 ~ 23256812 (+)
G1720836 NA other downstream 675906 25611816 ~ 25612268 (+)
G1720853 NA other downstream 700425 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 1102392 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 1393864 26324744 ~ 26333964 (+)
G1722079 NA other downstream 1885737 26821647 ~ 26821935 (+)

Expression


Co-expression Network