G1720766


Basic Information

Item Value
gene id G1720766
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25501513 ~ 25517265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971410
gaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggtgatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaacaaTGAGGAGGGGacactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactacataatgttgttgggtctgtaaccatgaggaggggatattatataatgttgttgggtctgttacCATGAGGaagagatactatataatgttattgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgttaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtct
>TU1971403
gaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggtgatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgttaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgg
>TU1971404
gaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgttaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtct
>TU1971408
gaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagggatactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggagGGGacactatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggatactacataatgttgttgggtctgtaaccatgaggaggggatattatataatgttgttgggtctgttacCATGAGGaagagatactatataatgttattgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgttaccatgaggaggggatactatataatgttgttgggtctgtaaccatgaggaggggataatatataatgttgttgggtctgtaaccatgaggaggggatactatataatgttgttgggtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971410 False 647 lncRNA 0.40 4 25501513 25515757
TU1971403 False 312 lncRNA 0.41 2 25514745 25517265
TU1971404 False 316 lncRNA 0.41 2 25514745 25515757
TU1971408 True 521 lncRNA 0.40 2 25514745 25515757

Neighbor

gene id symbol gene type direction distance location
LOC110500118 LOC106609342 coding upstream 709946 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 756629 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 777828 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 844189 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 863958 24634677 ~ 24637555 (+)
LOC110500123 NA coding downstream 251621 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 354556 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 374608 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 414325 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 470837 25988102 ~ 26012328 (+)
G1720586 NA non-coding upstream 47036 25374552 ~ 25454477 (+)
G1720607 NA non-coding upstream 88437 25409457 ~ 25413076 (+)
G1720589 NA non-coding upstream 119297 25380471 ~ 25382216 (+)
G1720484 NA non-coding upstream 253938 25247284 ~ 25247575 (+)
G1720464 NA non-coding upstream 260193 25241108 ~ 25241320 (+)
G1720838 NA non-coding downstream 96634 25613899 ~ 25614210 (+)
G1720857 NA non-coding downstream 128004 25645269 ~ 25645821 (+)
G1720860 NA non-coding downstream 129177 25646442 ~ 25654842 (+)
G1720869 NA non-coding downstream 145540 25662805 ~ 25664431 (+)
G1720892 NA non-coding downstream 173360 25690625 ~ 25691013 (+)
LOC110500097 LOC106576231 other upstream 1183975 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1206716 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1365190 24135764 ~ 24136323 (+)
G1719225 NA other upstream 1427065 24073405 ~ 24074448 (+)
G1717785 NA other upstream 2244701 23256126 ~ 23256812 (+)
G1720836 NA other downstream 94551 25611816 ~ 25612268 (+)
G1720853 NA other downstream 119070 25636335 ~ 25636589 (+)
G1721084 pfkfb3 other downstream 521037 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 812509 26324744 ~ 26333964 (+)
G1722079 NA other downstream 1304382 26821647 ~ 26821935 (+)

Expression


Co-expression Network