G1720908


Basic Information

Item Value
gene id G1720908
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25705281 ~ 25705507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971574
CACAGATACCGTGTGTGGCTATGAGGGCGAAGTCTTGCTCATCTCAAAATCTGCGGTGCTGCTCGTGGCATCATCATTTCATTGACTCTACCTTTATTTATAGTAAAAAAATAATCATATTCAccatataataattcacatttcctgttgctgcaggattattttcctgctgtagcaaactggctcaaattaagatcctacatctgtataagcTATGAACTATGAGC

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971574 True 227 lncRNA 0.38 1 25705281 25705507

Neighbor

gene id symbol gene type direction distance location
LOC110500118 LOC106609342 coding upstream 913714 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 960397 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 981596 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 1047957 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 1067726 24634677 ~ 24637555 (+)
LOC110500123 NA coding downstream 63379 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 166314 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 186366 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 226083 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 282595 25988102 ~ 26012328 (+)
G1720899 NA non-coding upstream 7743 25697327 ~ 25697538 (+)
G1720892 NA non-coding upstream 14268 25690625 ~ 25691013 (+)
G1720869 NA non-coding upstream 40850 25662805 ~ 25664431 (+)
G1720860 NA non-coding upstream 50439 25646442 ~ 25654842 (+)
G1720857 NA non-coding upstream 59460 25645269 ~ 25645821 (+)
G1720911 NA non-coding downstream 2702 25708209 ~ 25729598 (+)
G1720932 NA non-coding downstream 30277 25735784 ~ 25735996 (+)
G1720934 NA non-coding downstream 31265 25736772 ~ 25736982 (+)
G1720951 NA non-coding downstream 49493 25755000 ~ 25755211 (+)
G1720953 NA non-coding downstream 58283 25763790 ~ 25765550 (+)
G1720853 NA other upstream 68692 25636335 ~ 25636589 (+)
G1720836 NA other upstream 93013 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1387743 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1410484 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1568958 24135764 ~ 24136323 (+)
G1721084 pfkfb3 other downstream 332795 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 624267 26324744 ~ 26333964 (+)
G1722079 NA other downstream 1116140 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2617013 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2635994 28341423 ~ 28343734 (+)

Expression


Co-expression Network