XLOC_003663 (si:dkey-207b20.2)


Basic Information

Item Value
gene id XLOC_003663
gene name si:dkey-207b20.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40306579 ~ 40311746 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007118
CAAACAgacactcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagctgtaAGAGCAGGTGAGACAAAAACGCAGCGTTTAGACACATCCCACAGCAGGagggtgaacacacacacactgaaactcACAGACGGCAGAGGAGACGGTAATGCAGGAGTTTCTGAGGGTCTCCTGAGGGTCTGTGGAGCTGCAGATTCAGATTCTTCATCTCAGCTGGcgGGTGAGGATGGAGGGCGTTCTGGAGACtgcgctgtctgtgtgtgtgttcagactgaTGATCAGTGTATTGTTGTGTCCATCTATACTCACACACAGCACCACTGCGGTCAGTCTGTGCTGCTGCTGCCTGGTTCTCTTCACAGACCTCGCCGTCACCTTGTTCCTGCTCTACATGTGGCTGGTGGAGTTCTGGACGATTCCCTTTTCAGTGTCCTCAGACGTCATTGGCCTGCGCTTCCTGCTGTTTCTGTGTCAGTCTTATGCAGTGGTGCTGCTCTTAACACCTCCTCTGATGGCTGTGGAGATGCTGCTTCATATGCTGCAGCCTCAAAACGCAGGTCAATCCCACCACAAGCAATGCCTTTCTAGGATCATCGGCTTCTTGGGATGTTGTCTAGCATGGACGGTGAGCGCGCTTTACTGCAGCCATGACTGGACGCTGGAACGGATGTCTGTGGAGGATTGTCTGAAGAAAGAAGGATGGCTTGTGTTGTGCCTTCCCCATTTTGATGACTTATACAGCGCTCTTCTTGCACTGGTGGTCCTGTTGAGTTTGACAGGGGGTTTAATCGAGATGAAGGCGTCCCGTAGAACACCTCAAGATGACATCAAGCTTATGCATACGTCACTAACTCTGGTAGAGTGTGAAAAGGCCGCCGGCAGCTGTGCTGTTCACAGGGTTGGGTTTGTGTACAGTGAGCCGCGATGGTTGTGTCCTCAGAATGATGCGCTGTGCCCTGAACAAACCAGTTTGACAGACGGTTACATCCAGAAACAAAGGCAATCAGCCGGCCGTGCTGTGTTTGCGCAGTCTAAAAGTGATCTTCTGCTTGAGGTCTCATcactgctgtgtaaaacagatcAGCGGATCTCGAACTGCACACACTGCCGCCTTCATAAAAGGGAAAGTCCCTGCTTGGGGCCAGAAATGTTCACAGGGTTGGTATGCGTGGCTCTGCTTTGCTGTTTTCCCACAGTCGTCAGCAGTAATGTTCTTCTAATCTTTAACCTGGAGAAGCTGGTGGCGTACAGTTTGAAACTCTTATCTCTGTCAGTCAACAGACGCCCGCTTCTGTAAATGATGTTGGAAAAAAAACTCTGAATGACCTCTGACACTGGATCTGTTTTGGAATTGAAGAAACTggattattaaaaagaaaatttacacaaaaaaatgGTTGAAAGATTATTTTAGAGGAGCCAAAAACAGAAAGACTCTCCTACAGCATCATTACAAAACTCCACTTTTAAAAGCTGTGTTCACTCTTaattcaggccccgtttacactaagttttagttttaaaac

Function

symbol description
si:dkey-207b20.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-467 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000101201

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007118 True 1554 mRNA 0.48 3 40306579 40311746

Neighbor

gene id symbol gene type direction distance location
XLOC_003661 si:ch211-193i15.1 coding upstream 91025 40208239 ~ 40215554 (+)
XLOC_003660 si:dkey-264d12.5 coding upstream 138201 40148181 ~ 40168378 (+)
XLOC_003659 NA coding upstream 189933 40111481 ~ 40116646 (+)
XLOC_003658 si:dkey-264d12.1 coding upstream 234278 40032790 ~ 40072301 (+)
XLOC_003657 per3 coding upstream 285499 39959039 ~ 40021080 (+)
XLOC_003664 mmel1 coding downstream 219002 40530748 ~ 40605868 (+)
XLOC_003665 AL954137.1 coding downstream 262197 40573943 ~ 40578255 (+)
XLOC_003666 AL954137.2 coding downstream 306150 40617896 ~ 40641787 (+)
XLOC_003667 slc45a1 coding downstream 337666 40649412 ~ 40674070 (+)
XLOC_003668 errfi1a coding downstream 500844 40812590 ~ 40847615 (+)
XLOC_003369 CR854846.2 misc upstream 24183497 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27594583 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27612316 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27620980 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27626551 12679732 ~ 12680028 (+)
XLOC_003655 NA non-coding upstream 379707 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 827312 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 1015945 39287369 ~ 39290634 (+)
XLOC_003652 NA non-coding upstream 1022603 39262536 ~ 39283976 (+)
XLOC_003669 NA non-coding downstream 553209 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 577434 40889180 ~ 40889294 (+)
XLOC_003671 NA non-coding downstream 579935 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 585580 40897326 ~ 40899889 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 880583 41192329 ~ 41201272 (+)

Expression


Co-expression Network