G1720953


Basic Information

Item Value
gene id G1720953
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25763790 ~ 25765550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971625
TTTCCAATTCATAGTGTTTCGAAAATGACCTCATACAATACGTCTGACATCATACAAACATCTGACTATCATTGAATAAAGCAGGTCTATTATGGTCGATTACTGTCACAATGAGGTCACACATAATTTCATCAAATACATAATATATTAATACAAACTGATAGCCTATCTTTAGAAAAGGGCGTGCATAATCTATGGACTCAATCATGTTTTTGTGATTAAAATGTGCCCTCTTCTttctcccacacacacaacctctcatTTCACAGTGGtgtatagtaataataataatatgttattGTAAAACAGGCGAATTCATTCATATGTAGGCCTGTTTATTTGATTGGAATGACCACTGTCTTTCCAAACCAGCATTTGGGTTTGACTGGCACTTCTCTAGTGACACCGACAGGTGAGAGGCGCGTTAACAGTTTCATTAAGGGGGTCTCCTGATCCCCAGGCATATGTGGCCTCGCCACTGAAACTGAAACAACCGAGCAGCGCGGCAGGATTATTTGAAAGCATAGACGCGTATAGAGAGGAGGCCTTGCGCTGTGCCGTGCCTGTGTGCCTCTCCTCACCCGCACTTCCCCTTTCGACAGCAAAAATCGCTCCACTTCTTCAGAGACTTATATGCGTCACTTCTGGTCCTGCCTTGTTGGATGTGATAGACATTCCAGATACCTCAGCAGACACCGAGGACGTTGTGAATCAATAGTGGTTTTATAGTGGAGCCTGGCTAACGCAGCTAAACAAATGTATCCACTCCACAACAGGATTTTGAATTGCGCAAGGCGTGTTCCGGGTTTTATGTTTAGAAGACCACAGAGTCGACCTTTCTCCAATACTTATTTTCAACTATAAATTTGCAATGTAGACACATTCTATTATATGACCTCATTAATAGATAACCTCTTTAAGATTCATTTTAGAGGATGTATCTTTACGCATATTACAGCACACACATACTTAATCCACAAAttaaaatgatttatttttttgtaGTAATAAGTGAATATTATTCAGCATTGAATAAGCCTGATGATATGCATCGTCTAATCCACTGTTTTCTATATCTCTCCAAATGCTATGTGGCACTGATATTAATCTCATTACAGTGAACTGGTTTCTAGCAGAGCCTGAATAACCTTTTATTTTAATTACCCCCACTTGCTTGGATAACATTCCGCCTCGCCAGTCGTGCCCCTCTGCCACGGAGAGTGCTCATTCGTGATTACCCCCTCTCAATGCAGCCCCGCATCCGGACTCTATCAAAGTTATTACTGGCTCTGCGTAAACAATACAACTGTCGCGTGCACCAGTCTGACAGTAATGGGATTATCTTAAACATATAAACTGGCGCGAGACAGCCATTCCGGCATGGAGGCCGCGGTCACAGATTTAGcctatctctctttccctatgTGAAACATAGAACAACTGAAAACAGATCTGGTTTAGGCACAGCTTAAAACTATTCTGATTTAAGGGTACTAAGGCTGTTTAATCGTTCACTGGACTAATTTCCTTTGCTTTGGAAAGTGGAAAATCGTTCAATCTCATGTGGGCAAATGCACTTTGAATTATTTAATTCGCTTTCTATTAAAAGCAATGTGTTCTCACAAATAAGGGTGTTGATTGAATGCGATTAATACAGATGTTTGTGTAGCCTAATAACATATAGAAACGTTATAACGTCCCCAATTAAAAGTGTTACTCAGTCAAATTGATGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971625 True 1736 lncRNA 0.40 2 25763790 25765550

Neighbor

gene id symbol gene type direction distance location
LOC110500118 LOC106609342 coding upstream 972223 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 1018906 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 1040105 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 1106466 24653227 ~ 24657324 (+)
LOC110500922 LOC106576224 coding upstream 1126235 24634677 ~ 24637555 (+)
LOC110500123 NA coding downstream 3336 25768886 ~ 25772881 (+)
LOC110500127 LOC106576199 coding downstream 106271 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 126323 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 166040 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 222552 25988102 ~ 26012328 (+)
G1720951 NA non-coding upstream 8579 25755000 ~ 25755211 (+)
G1720934 NA non-coding upstream 26808 25736772 ~ 25736982 (+)
G1720932 NA non-coding upstream 27794 25735784 ~ 25735996 (+)
G1720911 NA non-coding upstream 34192 25708209 ~ 25729598 (+)
G1720908 NA non-coding upstream 58283 25705281 ~ 25705507 (+)
G1721002 NA non-coding downstream 70706 25836256 ~ 25836466 (+)
G1721004 NA non-coding downstream 81053 25846603 ~ 25846830 (+)
G1721005 NA non-coding downstream 82583 25848133 ~ 25848463 (+)
G1721016 NA non-coding downstream 93678 25859228 ~ 25859428 (+)
G1721011 atp5c1 non-coding downstream 101046 25866596 ~ 25868044 (+)
G1720853 NA other upstream 127201 25636335 ~ 25636589 (+)
G1720836 NA other upstream 151522 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1446252 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1468993 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1627467 24135764 ~ 24136323 (+)
G1721084 pfkfb3 other downstream 272752 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 564224 26324744 ~ 26333964 (+)
G1722079 NA other downstream 1056097 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2556970 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2575951 28341423 ~ 28343734 (+)

Expression


Co-expression Network