G1721005


Basic Information

Item Value
gene id G1721005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25848133 ~ 25848463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971685
aatacaaaatagattcctgtaatgttttcatttactgtaacgatgtaactctcacctgtttgcatgatggaaaattcgcattacagatgccactgtggatctttgcagattgggttgcaccctcaaccctgcctctctcaatgagagaccatggttcacgacatggtctataagtgtagcccttatttcatttgaaataacagctctttgtcttctttgtcttcctccacgcatccgccctctccctgccacccttctccctccacgaacccatcttccttgttccatttccaaaatgagtctttctgagctctacctatatatactgtaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107687231 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971685 True 331 lncRNA 0.43 1 25848133 25848463

Neighbor

gene id symbol gene type direction distance location
LOC110500123 NA coding upstream 75252 25768886 ~ 25772881 (+)
LOC110500118 LOC106609342 coding upstream 1056566 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 1103249 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 1124448 24720968 ~ 24723685 (+)
LOC110501038 NA coding upstream 1190809 24653227 ~ 24657324 (+)
LOC110500127 LOC106576199 coding downstream 23358 25871821 ~ 25875841 (+)
LOC110500124 itih5 coding downstream 43410 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 83127 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 139639 25988102 ~ 26012328 (+)
il15ra LOC100136332 coding downstream 215353 26063816 ~ 26121228 (+)
G1721004 NA non-coding upstream 1303 25846603 ~ 25846830 (+)
G1721002 NA non-coding upstream 11667 25836256 ~ 25836466 (+)
G1720953 NA non-coding upstream 82583 25763790 ~ 25765550 (+)
G1720951 NA non-coding upstream 92922 25755000 ~ 25755211 (+)
G1720934 NA non-coding upstream 111151 25736772 ~ 25736982 (+)
G1721016 NA non-coding downstream 10765 25859228 ~ 25859428 (+)
G1721011 atp5c1 non-coding downstream 18133 25866596 ~ 25868044 (+)
G1721010 LOC106576198 non-coding downstream 28453 25876916 ~ 25884807 (+)
G1721050 NA non-coding downstream 126099 25974562 ~ 25975664 (+)
G1721087 pfkfb3 non-coding downstream 193445 26041908 ~ 26043103 (+)
G1720853 NA other upstream 211544 25636335 ~ 25636589 (+)
G1720836 NA other upstream 235865 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1530595 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1553336 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1711810 24135764 ~ 24136323 (+)
G1721084 pfkfb3 other downstream 189839 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 481311 26324744 ~ 26333964 (+)
G1722079 NA other downstream 973184 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2474057 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2493038 28341423 ~ 28343734 (+)

Expression


Co-expression Network