Gene
RNA
| Item | Value |
|---|---|
| gene id | G1721011 |
| gene name | atp5c1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 25866596 ~ 25868044 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atp5c1 | Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane and myelin sheath. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma). |
| description |
|---|
| PREDICTED: ATP synthase subunit gamma, mitochondrial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1971698 | True | 520 | lncRNA | 0.47 | 3 | 25866596 | 25868044 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500123 | NA | coding | upstream | 93715 | 25768886 ~ 25772881 (+) |
| LOC110500118 | LOC106609342 | coding | upstream | 1075029 | 24787480 ~ 24791567 (+) |
| LOC110500114 | LOC106576221 | coding | upstream | 1121712 | 24659827 ~ 24744884 (+) |
| LOC110500113 | LOC106609343 | coding | upstream | 1142911 | 24720968 ~ 24723685 (+) |
| LOC110501038 | NA | coding | upstream | 1209272 | 24653227 ~ 24657324 (+) |
| LOC110500127 | LOC106576199 | coding | downstream | 3777 | 25871821 ~ 25875841 (+) |
| LOC110500124 | itih5 | coding | downstream | 23829 | 25891873 ~ 25907486 (+) |
| sfmbt2 | LOC106576194 | coding | downstream | 63546 | 25931590 ~ 25977279 (+) |
| LOC110500131 | prkcq | coding | downstream | 120058 | 25988102 ~ 26012328 (+) |
| il15ra | LOC100136332 | coding | downstream | 195772 | 26063816 ~ 26121228 (+) |
| G1721016 | NA | non-coding | upstream | 7168 | 25859228 ~ 25859428 (+) |
| G1721005 | NA | non-coding | upstream | 18133 | 25848133 ~ 25848463 (+) |
| G1721004 | NA | non-coding | upstream | 19766 | 25846603 ~ 25846830 (+) |
| G1721002 | NA | non-coding | upstream | 30130 | 25836256 ~ 25836466 (+) |
| G1720953 | NA | non-coding | upstream | 101046 | 25763790 ~ 25765550 (+) |
| G1721010 | LOC106576198 | non-coding | downstream | 8872 | 25876916 ~ 25884807 (+) |
| G1721050 | NA | non-coding | downstream | 106518 | 25974562 ~ 25975664 (+) |
| G1721087 | pfkfb3 | non-coding | downstream | 173864 | 26041908 ~ 26043103 (+) |
| G1721125 | NA | non-coding | downstream | 237897 | 26105941 ~ 26106170 (+) |
| G1720853 | NA | other | upstream | 230007 | 25636335 ~ 25636589 (+) |
| G1720836 | NA | other | upstream | 254328 | 25611816 ~ 25612268 (+) |
| LOC110500097 | LOC106576231 | other | upstream | 1549058 | 24315919 ~ 24321712 (+) |
| adm2a | LOC106609361 | other | upstream | 1571799 | 24277797 ~ 24294858 (+) |
| G1719268 | NA | other | upstream | 1730273 | 24135764 ~ 24136323 (+) |
| G1721084 | pfkfb3 | other | downstream | 170258 | 26038302 ~ 26041843 (+) |
| cep83 | LOC106609290 | other | downstream | 461730 | 26324744 ~ 26333964 (+) |
| G1722079 | NA | other | downstream | 953603 | 26821647 ~ 26821935 (+) |
| LOC110501048 | LOC106609163 | other | downstream | 2454476 | 28311018 ~ 28335924 (+) |
| LOC110500183 | LOC106609180 | other | downstream | 2473457 | 28341423 ~ 28343734 (+) |
