G1721010 (LOC106576198)


Basic Information

Item Value
gene id G1721010
gene name LOC106576198
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 25876916 ~ 25884807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971691
AGGAGTACTGGTTGTTGTTGGGGATATAGAGGCCCAGGAAGTCCACGTGGGTTGGGTGTTTCTTCCACACACGATGTAGCAGCACCATCACAGTGATCTTGTCATCCACCGTCACCATCACCTTGGAGTCCTTCACTATGGAAACCTTCACCCGGTCCTGGGTGATGTCGGCCGTGGCTCCCCAGGTGAAGGAGTGGTTGTTCCTGCCGTGAGTCAGGTCGATACGGTCGGTGCTGACTGACACTCTGATGCCGTCAGGCTGGTAGAACACTGATATGGTGCCAAAGTACGTGTtcaccttctccttctccttctcctccaccccGACCCTCTTAGAGCCAACCAACTGGCCATTCACCACCACGCCTGCACCAGGGTCTGACACCAGATTGAGGATGTGTCCAGGCTCTGAGTCGATGTTGAAGCAGATGTCCATGTTGTTTTTAGGCAGGTGGACGATGAAGTGAGGGTCGTTCTCCACTATGGTGATGTGATCTGGTAGGGGCCTCTCGGCGTGGCTAGGGGGGGCAGGGGTGGTCCTCTGGACCCAGGGGGGGATGCTGTGAACCATCTGCACTGGAGTCCTTCCTCCGAGAGCAGCCATACCAGatcctcctacacacacacacacacacacacaccaagtttgGGAAAGCTTTAGTCACTCTCTTGCCCTCATGTACATTTACAAGACCCAAAATGGGGGACTCTAGTGATTTTGATCAGGCACCTGCACAGCAGCCCTGTTTGGGGTCATTAGGGGAGTCAGCGAGCAACCTCTCCTTGCCCTCCTCACTCTCCACCAGTAGGGCAGTGAGGGGCGTGACAAACTGGTGCTCCACAGCCAAGGTCAGGATCCTCTGTGTGATCTTCCTCTTGTGACCAGCAGTGGGGGCCAGGGACCTtcgaCCAGTAGCTGGTTGACAGTGATGTAGGCCCACATCTGTCTGGCGAAGCCAGTGAAGGCATGCTGCTGCTGGGCCAGCGCAGCGTCTAGCTCCAGGTAGTCTGCTTCAGTCTGTAGGGACAGGTCCAGACGATcctgggaggaagagggggacagagagagggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcagtggtgtaaagtacttaagcaaaaaatatttttaagtactacttaagtcattttttggggtatctgtactttactatttatgtttgaatacttttacttcactacattcctactaaaagtatgtactttttactccatacattttccctgacacccaaaagtactttttacagtttgaatgcttagcaggacaggaaaatggaaAATTCCcccacttatcaagagaatatccctggtatTCGCTACTCCCTCatatctggtggactcactaaagagacatgttttgtttgttaattatgtctgagtgttggagtttgcccctggctatctggttTGGTTAATATAAGcaatttcaaatgatttatacttttaatttTACTTTGGATACTTAActatttttaaaaccaaatacttttagacttttactccagtaatattttactgggtgactttcactttgacttgagtcattttctttacttttactcaagtatgactttTGGGTACTTATTCCACccctgtgtgtatgagtgtgcatgcgtgcatgtgtatgTATGACTCACAGCGGATGCAGTGGTGAAGCTGTTAAGAGTAGTGGACTCAGAGGGCAGCACCTTCCCAGCCACCACCAGCTCTGAGCCACTGAAGTACTTGTCAAAGTGGTTCTGTGTGACGTCAGAGACAGAGTCCTCTGGGAACTGAACTGTGATCTTCCtcaggagaggagacgagacctGGCTGTAGAACCGCCGTATCTGATCTGAGGCGTCGTGGCTGGTGTAGATCCTCTGGGCCACGCCCCTATTCTCCATGGCGATGCGTTCCAGGAAGTCGTAGTCGACATCGAAGCCGATGCCcaatgagaagagagagaactcCTCCCTCATGACCTTCTTCACATTCTTCTGGATGGCGCTGAGCTTGATCTCTCCGACAGTGGGGTCTCCATCAGACACCAGCATGATCATGGAGACAGAGCGTGGGTCAATCATGCCCTGATTGGACGCCTTCACCAGCATCTGCACCGCCCTCATCAATGCCTCATTGATATTGGTGCctcCGTTGGGTTTGATGTTCTGGATGTATTTCTTGGCCTCAGCCACCTGTATGGTGCTGCCTGGAACCAGCTCCTCACTCCAGCAGCGCACGTTGTGGTTGAAGTCAACTATGCTGAAGTAGTCATCCATGGTCAGGTCATCCAATATGGTCTGCATAGCCTccacagtCTGCTTCATCTTGACTCCCCACATAGATCCACTGACGTCAATGACGAATACAATGTTTTTAGGAAGGGGGGAGAGGTTGGCCGGGGCGAAGAAATGCACAAAATGCCCGTCAGAAACCTAGGAGAAACAGTGAGATAACAGTGACCAATACTTCCTGTATTACATTTCTGTTACAAAGTAAAGTGACACAAAGAGTGTGTTACTGCGTGTGTTTCGGTCAGTGTGTGTACCCACATGTAGTTCCCCGGCATTGCTGTCTCTCAGGACGTCGTATTTGACGGTAAAGATGCCATCGATAGCGCTGGTGGTGCAGTTCTCGCACTTCCTCTGCTGCTGGAGCGAGGGCTTGAACACCACGTGAGCCTTGTCCTTCGAGGAGGTGAGTTTGGCCATGCCGCTGAAATGCTCTCCCAAGGTGTTGAGTGTCTCCACAGAGGCGATGCCGCTGGGCTCATAGATATACACGTCCACCtgcggagagacagggagacggtTCAAATACGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971691 True 2846 lncRNA 0.50 9 25876916 25884807

Neighbor

gene id symbol gene type direction distance location
LOC110500127 LOC106576199 coding upstream 1075 25871821 ~ 25875841 (+)
LOC110500123 NA coding upstream 104035 25768886 ~ 25772881 (+)
LOC110500118 LOC106609342 coding upstream 1085349 24787480 ~ 24791567 (+)
LOC110500114 LOC106576221 coding upstream 1132032 24659827 ~ 24744884 (+)
LOC110500113 LOC106609343 coding upstream 1153231 24720968 ~ 24723685 (+)
LOC110500124 itih5 coding downstream 7066 25891873 ~ 25907486 (+)
sfmbt2 LOC106576194 coding downstream 46783 25931590 ~ 25977279 (+)
LOC110500131 prkcq coding downstream 103295 25988102 ~ 26012328 (+)
il15ra LOC100136332 coding downstream 179009 26063816 ~ 26121228 (+)
cdc123 LOC106576189 coding downstream 253284 26138091 ~ 26147264 (+)
G1721011 atp5c1 non-coding upstream 8872 25866596 ~ 25868044 (+)
G1721016 NA non-coding upstream 17488 25859228 ~ 25859428 (+)
G1721005 NA non-coding upstream 28453 25848133 ~ 25848463 (+)
G1721004 NA non-coding upstream 30086 25846603 ~ 25846830 (+)
G1721002 NA non-coding upstream 40450 25836256 ~ 25836466 (+)
G1721050 NA non-coding downstream 89755 25974562 ~ 25975664 (+)
G1721087 pfkfb3 non-coding downstream 157101 26041908 ~ 26043103 (+)
G1721125 NA non-coding downstream 221134 26105941 ~ 26106170 (+)
G1721126 NA non-coding downstream 221972 26106779 ~ 26107037 (+)
G1720853 NA other upstream 240327 25636335 ~ 25636589 (+)
G1720836 NA other upstream 264648 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1559378 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1582119 24277797 ~ 24294858 (+)
G1719268 NA other upstream 1740593 24135764 ~ 24136323 (+)
G1721084 pfkfb3 other downstream 153495 26038302 ~ 26041843 (+)
cep83 LOC106609290 other downstream 444967 26324744 ~ 26333964 (+)
G1722079 NA other downstream 936840 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2437713 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2456694 28341423 ~ 28343734 (+)

Expression


Co-expression Network