G1721131 (fbxo18)


Basic Information

Item Value
gene id G1721131
gene name fbxo18
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26130779 ~ 26132124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971831
ATTGCAGTCAGGCACGGTCATTTTGCCATGTGTGTTTTTGTACGTGTTTGGGACGTGGTTGGGGGTGATGTGTGTGTCGGCCGAGGCCATGTAGGCATTGAGGGTCAGGGTGACCACCTTGGCGTTGACAAAGCCCCCGCTGCCCTTAGGCAGCACCCAGGCCACAGAGAAGGGCTTCACGTTACTAGACAACTTCTTTAGCTCCTGGtacCTCTTTCCGACGGCCCCGAAGGCCATGGAGTGGACCGTCCTGCAGTCCACGTTGCTGGGGAAACAGCGCTGGGCCTGGGTAGCCACAGACTTGTTGAAGGCCATGTAGAGGAAGTGGTGGTGTGGCCTCTGCTGGGCGTACCGAATCAGGGTGGTGGTCTTCCCTGTGcCTGCGAAGGCCATGATCTTGACCACGTGGTCTCTATGGATGTCATGGTTGAGGATCTGCTGCTGTTCGTGGGTCACCTGAACTTGGGCTCTCCCACTCTGATTGGTTATTGCTGTGGGCAAGGCATTCTCCATCAGGTGAAGGACATAGAAGATGTTGTAGTGCCACCTGTTGCTGATGTTGATGTCGTTCCTCCTCATGGCGAGCAGCATGGTTGCCATGGCGCTGAGGTACTCCGTGATGGCGCTGGCTGAAGGGAGACAGCCTCTGAGACAGACAACCAGGTCCAGAACATCTCCCACACCGTCACACAGCACCAGCATCAGGGCCATGGCTGCCCACGG

Function

symbol description
fbxo18 Predicted to enable 3'-5' DNA helicase activity. Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Orthologous to human FBH1 (F-box DNA helicase 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971831 True 723 lncRNA 0.57 5 26130779 26132124

Neighbor

gene id symbol gene type direction distance location
il15ra LOC100136332 coding upstream 9551 26063816 ~ 26121228 (+)
LOC110500131 prkcq coding upstream 118451 25988102 ~ 26012328 (+)
sfmbt2 LOC106576194 coding upstream 153500 25931590 ~ 25977279 (+)
LOC110500124 itih5 coding upstream 223293 25891873 ~ 25907486 (+)
LOC110500127 LOC106576199 coding upstream 254938 25871821 ~ 25875841 (+)
cdc123 LOC106576189 coding downstream 5967 26138091 ~ 26147264 (+)
camk1da LOC106576188 coding downstream 16631 26148755 ~ 26217898 (+)
LOC110500144 optn coding downstream 96852 26228976 ~ 26237213 (+)
mcm10 mcm10 coding downstream 105885 26238009 ~ 26247743 (+)
LOC110500147 LOC106609285 coding downstream 134018 26266142 ~ 26301475 (+)
G1721128 NA non-coding upstream 3789 26107859 ~ 26126990 (+)
G1721126 NA non-coding upstream 23742 26106779 ~ 26107037 (+)
G1721125 NA non-coding upstream 24609 26105941 ~ 26106170 (+)
G1721087 pfkfb3 non-coding upstream 87676 26041908 ~ 26043103 (+)
G1721188 NA non-coding downstream 116092 26248216 ~ 26248462 (+)
G1721189 NA non-coding downstream 116380 26248504 ~ 26249045 (+)
G1721191 NA non-coding downstream 119063 26251187 ~ 26251509 (+)
G1721192 NA non-coding downstream 121950 26254074 ~ 26254706 (+)
G1721193 NA non-coding downstream 123544 26255668 ~ 26256496 (+)
G1721084 pfkfb3 other upstream 88936 26038302 ~ 26041843 (+)
G1720853 NA other upstream 494190 25636335 ~ 25636589 (+)
G1720836 NA other upstream 518511 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1813241 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1835982 24277797 ~ 24294858 (+)
cep83 LOC106609290 other downstream 197650 26324744 ~ 26333964 (+)
G1722079 NA other downstream 689523 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2190396 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2209377 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 3080695 29209169 ~ 29214283 (+)

Expression


Co-expression Network