G1721205


Basic Information

Item Value
gene id G1721205
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26263972 ~ 26264269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1971916
ATAATGTAGTTTATATGCAtaaatgaacacatttacagaaaataaatacattttgcaaTGTTACAGTTCCACTCCCAATGCTCAGTTTGCTCTGAAAAAGCCTGACAATTACAGTAAAACAGTTGAAAAGGATACAACAAAAGAAGATGGTCGATCGAGATGATTCACGACCACTTTCAGTCTGTCTGCCGCTCCAGACATTTTGCAAgaatatatgttttattgtgtaTTCCCTTCGATGCGCAGACAGCCATATGCCCACTGTTATGTAGACCTATGCGGCTGGTGTAGGCTACTC

Function

NR:

description
phytanoyl-CoA dioxygenase, peroxisomal isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1971916 True 298 lncRNA 0.39 1 26263972 26264269

Neighbor

gene id symbol gene type direction distance location
mcm10 mcm10 coding upstream 16229 26238009 ~ 26247743 (+)
LOC110500144 optn coding upstream 26759 26228976 ~ 26237213 (+)
camk1da LOC106576188 coding upstream 46074 26148755 ~ 26217898 (+)
cdc123 LOC106576189 coding upstream 116708 26138091 ~ 26147264 (+)
il15ra LOC100136332 coding upstream 142744 26063816 ~ 26121228 (+)
LOC110500147 LOC106609285 coding downstream 1873 26266142 ~ 26301475 (+)
LOC110500149 LOC106609287 coding downstream 52265 26316534 ~ 26324591 (+)
cep83 LOC106609290 coding downstream 60475 26324744 ~ 26333964 (+)
ncaph2 LOC106609295 coding downstream 164387 26428656 ~ 26439619 (+)
LOC110500156 LOC106609297 coding downstream 184988 26449257 ~ 26511168 (+)
G1721204 NA non-coding upstream 301 26263324 ~ 26263671 (+)
G1721203 NA non-coding upstream 937 26262676 ~ 26263035 (+)
G1721201 NA non-coding upstream 2613 26261131 ~ 26261359 (+)
G1721200 NA non-coding upstream 3355 26260310 ~ 26260617 (+)
G1721194 NA non-coding upstream 6231 26257511 ~ 26257741 (+)
G1721207 NA non-coding downstream 1341 26265610 ~ 26265857 (+)
G1721246 NA non-coding downstream 107563 26371832 ~ 26379091 (+)
G1721294 NA non-coding downstream 188171 26452440 ~ 26453819 (+)
G1721289 NA non-coding downstream 234521 26498790 ~ 26514372 (+)
G1721338 NA non-coding downstream 267683 26531952 ~ 26532250 (+)
G1721084 pfkfb3 other upstream 222129 26038302 ~ 26041843 (+)
G1720853 NA other upstream 627383 25636335 ~ 25636589 (+)
G1720836 NA other upstream 651704 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 1946434 24315919 ~ 24321712 (+)
adm2a LOC106609361 other upstream 1969175 24277797 ~ 24294858 (+)
G1722079 NA other downstream 557378 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 2058251 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 2077232 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2948550 29209169 ~ 29214283 (+)

Expression


Co-expression Network