G1721289



Basic Information


Item Value
gene id G1721289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26498790 ~ 26514372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1972012
GAGAGCTGGTAGAGTTAAATGGTCTTTGTCCGAGAACACACCACGACTATGACTGAGAGAGCAATCTGCCATAAGTGTTTTCTTTTCGAGAGGATCGTTTGTGAGAAACGTGTACAGAATGCAGTAAGCGTTATAGCTGGTGCCTGGATTTGTAGTGTGCTGTCATGACTGACAGTTAGTTGGCTGGTTTCATAGATGTATGTAGGCGAGCTAATCAGCTAACATTCTGTGGGTGTGTAGGTGACAAGACACTGAAAGCGTGCTTAGCCAATATTCCTCTGTATTCCAGTATCCTATTGTAGAgtaatagcattataaatatgcATAGGTAATTAGTGCTTCTAATTTATGCTAAGAATCAATTCATTACGACTTTAAGTATATGCTATTAGTTTCAATACGTGATTCATAATCATAAACGTATGATGGGCAATTAGACACTGTGTATAGAATCTTTTTTCCCACAGTGCAGAGACAATATAAGAACTCATTGGTAGGTAAATGCATGCTACAGTGTATGTAAAAACAATATCTGTAGTTGTGGACCAACATGTGgtatttgtattgtattgtaaataGGAAATCATTTAGCACAGTTAAATAACGTGGTTTGTTGATTTGAGAGCAGTTCTAGATTGAGTAGAGGCTTCTTTTTGAATTGGCTGAACACAGCCAGTGCATGAATAGTGTATATGTGTATGAGACCGTAACATGTTTAGATATTGCATGTTAGACTTATTAACTTGCATGCCAATAGATGAGTAGATCTAGTCCCGTGTAGTCACAGTAATTTCAGCCAATCCATTTTGACCTTATTAATGCATGACTAATCAGAAtcatttgtgattttttttctctctcactatgtCCGTCTCTCTTAGTTGATTTACTACTTTACTGGGTTGTCACTATTAATATTTTCACTTTGGTTTCATAcagtctattctactctattgtactctactttattctactttTCTTCTTCAATTGTCTGGTCTCTACAGTGTGTATAGATTTATGTGGTATTTATCTTCTCTGCTGTGCTTCAAATACTGTAAATTCCACTGACTGTGTATTTTCTTTTTACCCAGCTTCTATTCCAGCATGGAAGCTTAAACAATAAGGGAGAGACACATTACGGAAACTATTCTACATGTTAAAACAACCTGTGCTCTTAACTAGAAACTGGCTGCTGCTCACTGCATGTGATGATGTGAagtttgacctttgacctcatgtaaagctgctgctcattctgtatgtctctctgtctgggtctgtgtgaCATGGCTACTGTCAATGTCTGTTTTATGCGGTGCTGAATCTGATTTAGCCATAGTCTCTACTACAACACCTTGCCAGTCAATGTCTCTATGAGCTTTTATGGGTTAATGAGAATATTGTGAGTATTTTGGTAAATAGGCTGTACATTTTGTAAATGAACTGAGAAATAAAAGTAGTTtatccttattctctctctctctctctctctaaactcagcaaaaaaagaaacgcc
>TU1972016
GTAGTGTAATGGGGTGATCTGACCATATAAGCTGTTATGTCATTAATGTTTAAACTCTGGGAGAGTTGTGGTTGGCCCAGGGGACAGAGTTAAATGGTCTTTGTCCGAGAACACACCACGACTATGACTGAGAGAGCAATCTGCCATAAGTGTTTTCTTTTCGAGAGGATCGTTTGTGAGAAACGTGTACAGAATGCAGTAAGCGTTATAGCTGGTGCCTGGATTTGTAGTGTGCTGTCATGACTGACAGTTAGTTGGCTGGTTTCATAGATGTATGTAGGCGAGCTAATCAGCTAACATTCTGTGGGTGTGTAGGTGACAAGACACTGAAAGCGTGCTTAGCCAATATTCCTCTGTATTCCAGTATCCTATTGTAGAgtaatagcattataaatatgcATAGGTAATTAGTGCTTCTAATTTATGCTAAGAATCAATTCATTACGACTTTAAGTATATGCTATTAGTTTCAATACGTGATTCATAATCATAAACGTATGATGGGCAATTAGACACTGTGTATAGAATCTTTTTTCCCACAGTGCAGAGACAATATAAGAACTCATTGGTAGGTAAATGCATGCTACAGTGTATGTAAAAACAATATCTGTAGTTGTGGACCAACATGTGgtatttgtattgtattgtaaataGGAAATCATTTAGCACAGTTAAATAACGTGGTTTGTTGATTTGAGAGCAGTTCTAGATTGAGTAGAGGCTTCTTTTTGAATTGGCTGAACACAGCCAGTGCATGAATAGTGTATATGTGTATGAGACCGTAACATGTTTAGATATTGCATGTTAGACTTATTAACTTGCATGCCAATAGATGAGTAGATCTAGTCCCGTGTAGTCACAGTAATTTCAGCCAATCCATTTTGACCTTATTAATGCATGACTAATCAGAAtcatttgtgattttttttctctctcactatgtCCGTCTCTCTTAGTTGATTTACTACTTTACTGGGTTGTCACTATTAATATTTTCACTTTGGTTTCATAcagtctattctactctattgtactctactttattctactttTCTTCTTCAATTGTCTGGTCTCTACAGTGTGTATAGATTTATGTGGTATTTATCTTCTCTGCTGTGCTTCAAATACTGTAAATTCCACTGACTGTGTATTTTCTTTTTACCCAGCTTCTATTCCAGCATGGAAGCTTAAACAATAAGGGAGAGACACATTACGGAAACTATTCTACATGTTAAAACAACCTGTGCTCTTAACTAGAAACTGGCTGCTGCTCACTGCATGTGATGATGTGAagtttgacctttgacctcatgtaaagctgctgctcattctgtatgtctctctgtctgggtctgtgtgaCATGGCTACTGTCAATGTCTGTTTTATGCGGTGCTGAATCTGATTTAGCCATAGTCTCTACTACAACACCTTGCCAGTCAATGTCTCTATGAGCTTTTATGGGTTAATGAGAATATTGTGAGTATTTTGGTAAATAGGCTGTACATTTTGTAAATGAACTGAGAAATAAAAGTAGTTtatccttattctctctctctctctctctctaaactcagcaaaaaaagaaacgcc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1972012 False 1516 lncRNA 0.37 3 26498790 26514372
TU1972016 True 1591 lncRNA 0.37 2 26506033 26514372

Neighbor


gene id symbol gene type direction distance location
ncaph2 LOC106609295 coding upstream 59171 26428656 ~ 26439619 (+)
cep83 LOC106609290 coding upstream 164826 26324744 ~ 26333964 (+)
LOC110500149 LOC106609287 coding upstream 174199 26316534 ~ 26324591 (+)
LOC110500147 LOC106609285 coding upstream 197315 26266142 ~ 26301475 (+)
mcm10 mcm10 coding upstream 251047 26238009 ~ 26247743 (+)
LOC110500158 LOC106609299 coding downstream 6039 26520411 ~ 26618210 (+)
kcnd2 LOC106609300 coding downstream 347924 26862296 ~ 27012894 (+)
LOC110500161 LOC106609303 coding downstream 533591 27047963 ~ 27060560 (+)
cped1 LOC106609304 coding downstream 552566 27066938 ~ 27150379 (+)
LOC110500163 LOC106609305 coding downstream 638229 27152601 ~ 27161037 (+)
G1721294 NA non-coding upstream 44971 26452440 ~ 26453819 (+)
G1721246 NA non-coding upstream 119699 26371832 ~ 26379091 (+)
G1721207 NA non-coding upstream 232933 26265610 ~ 26265857 (+)
G1721205 NA non-coding upstream 234521 26263972 ~ 26264269 (+)
G1721204 NA non-coding upstream 235119 26263324 ~ 26263671 (+)
G1721338 NA non-coding downstream 17580 26531952 ~ 26532250 (+)
G1721350 NA non-coding downstream 29047 26543419 ~ 26543829 (+)
G1721900 NA non-coding downstream 181739 26696111 ~ 26749099 (+)
G1722002 NA non-coding downstream 257254 26771626 ~ 26771944 (+)
G1722030 NA non-coding downstream 271811 26786183 ~ 26786536 (+)
G1721084 pfkfb3 other upstream 456947 26038302 ~ 26041843 (+)
G1720853 NA other upstream 862201 25636335 ~ 25636589 (+)
G1720836 NA other upstream 886522 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 2181252 24315919 ~ 24321712 (+)
G1722079 NA other downstream 307275 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 1808148 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1827129 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2698447 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2743888 29256778 ~ 29259929 (+)

Expression



Co-expression Network