G1722060


Basic Information

Item Value
gene id G1722060
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 26808425 ~ 26808683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1972890
ggtagcgccggctaccgcaaaatctgttgtttacgtgtcgtgctggtattttggggggtgcatgctatcagataatagcttctcatgctttcgccgaaaagcattttacaaatctgacttggtggctagattcacaacgagtgtagctttaattcagtaccttgcatgtgtgttttaatgaaagtttgagatttaacgagtactaagtaaagtactataggtggcgctctgaaatttccgctgagcggtCCCTGTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1972890 True 259 lncRNA 0.44 1 26808425 26808683

Neighbor

gene id symbol gene type direction distance location
LOC110500158 LOC106609299 coding upstream 190215 26520411 ~ 26618210 (+)
LOC110500156 LOC106609297 coding upstream 297257 26449257 ~ 26511168 (+)
ncaph2 LOC106609295 coding upstream 368806 26428656 ~ 26439619 (+)
cep83 LOC106609290 coding upstream 474461 26324744 ~ 26333964 (+)
LOC110500149 LOC106609287 coding upstream 483834 26316534 ~ 26324591 (+)
kcnd2 LOC106609300 coding downstream 53613 26862296 ~ 27012894 (+)
LOC110500161 LOC106609303 coding downstream 239280 27047963 ~ 27060560 (+)
cped1 LOC106609304 coding downstream 258255 27066938 ~ 27150379 (+)
LOC110500163 LOC106609305 coding downstream 343918 27152601 ~ 27161037 (+)
stab2 stab2 coding downstream 362020 27170703 ~ 27210849 (+)
G1722030 NA non-coding upstream 21889 26786183 ~ 26786536 (+)
G1722002 NA non-coding upstream 36481 26771626 ~ 26771944 (+)
G1721900 NA non-coding upstream 59326 26696111 ~ 26749099 (+)
G1721350 NA non-coding upstream 264596 26543419 ~ 26543829 (+)
G1721338 NA non-coding upstream 276175 26531952 ~ 26532250 (+)
G1722076 NA non-coding downstream 10126 26818809 ~ 26819040 (+)
G1722077 NA non-coding downstream 10682 26819365 ~ 26819599 (+)
G1722095 NA non-coding downstream 23256 26831939 ~ 26844071 (+)
G1722273 NA non-coding downstream 322396 27131079 ~ 27192001 (+)
G1721084 pfkfb3 other upstream 766582 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1171836 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1196157 25611816 ~ 25612268 (+)
LOC110500097 LOC106576231 other upstream 2490887 24315919 ~ 24321712 (+)
G1722079 NA other downstream 12964 26821647 ~ 26821935 (+)
LOC110501048 LOC106609163 other downstream 1513837 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 1532818 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 2404136 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 2449577 29256778 ~ 29259929 (+)

Expression


Co-expression Network