XLOC_003664 (mmel1)


Basic Information

Item Value
gene id XLOC_003664
gene name mmel1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40530748 ~ 40605868 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007119
GATGTGCTGAATTGGAGCAGTAAATCTCCTGAAGGGAACGGAGCAGTCGATCAGGACTGTGTGATTGCAGGGCAGGTCACCACACCATGACCAGAACACATCAATCTGCCCACTGCTGCTCGCACAAAAGACGGACGTCTCCAGCATTCGTGTCCATCACCTCCAGCATGCAATTCCTTATCTATAACTCAAGTCATCACAtcacTCAGTCAGAGGAACATCTGAGCAGACAGACAGAGCCTCTCCACATCCAGCTGTCCGGACGCTGATTCatttcaccacacaccagctctGGGTGCAAACTCAGGAGGGGTGTTTGGGAAATTGAAAGGCATCCTAAAAGGGCCAACCAGGACTCCATCATTAGAGAGCTCCAAGAATGGGAAAATCAGAGAGCCAAATGGATATCATGGAGAAAAGCACCAAACCGAGAAAGCATCGCTGGACTGTAGTGGAAATCGGACTGTCTGTGATTGTGCTTCTGATGAGCTGTGCACTGGCTGGACTCATAGTGCTCTACACTTCAGCGCTGAGAGAGCGTTTTAACATAAACGATTCTTCAAAAGGGCTGAAATATCGATCAGACGCCGACAGCAATGTCTGTACAACCCCACAGTGTGTCACTGCCGCGGCTCGTCTGCTCCAGAACATGGACCCCAGTGTGGACCCGTGCCAGAACTTTTATCAGTACGCCTGTGGAGGCTGGATCGAGCGGCACGTCATTCCTGAAACCAGCTCACTCCACAGCGTCTTCAACATCCTCCGAGACGAGCTGGAGATTGTGCTCAAGGGAGTTCTGGAGATGGAAAATAAGGATGACAGAGAGGCCTTCAAGAAAGCCAAAACACTCTACAGCTCATGCATGAACGAGATTCTGATCGAGCAGCGCGACTCGCAGCCTCTACTCCGGCTCATTGACAGCATTGGCGACTGGCCCGTGGCTTCAGAGGTCTGGAATGGCACATCAGAGCAGACGTGGAGCCTTGAGGACACGCTGGCTGTTCTGAACGGTCGCTATAATAAGAAGGCTGTGCTGGAGATGTTCGTGTGGCCAGATGACCGCGACTCCAGCCGCTACATCATCCATGTCGACCAGCCAGCTTTAGGAATGCCTTCAAGAGATTATTACCTCAGCGATGGGAATTACAAAAAGGTACGCGAGGCCTACCTGGAGTTCATGGTTTCAATGGCGAGGATTGCAAGGGAAGACAGAAATTTGACCCAAGATGAAGAGCGTGTGTTGGAGGACATGTCTCAAGTCCTGGAGCTGGAGACAGACATCGCTAACGCTACCTCACCAGCAGAAGAACGCAATGACATCACTGTGCTCTACAACAAGATGACGCTGAGAGAAGCGCAGCAAACGTTCAACCTCAATggCTTTAACTGGACGCGCTACATCCAGGGTATCATGTCCAGCGTGTCCATTTCAGTGCAATCAGATGAGCCCATTGTTATTTACTGCTCCCCTTACCTGGAGAAGCTCAGCGAGGTCCTGTCCAAACACAGCCACAGGACTCTGCAGAACTATCTGGTGTGGATGCTGATCATGGACAGGGTCAGCAGTATGAGCCGTCGCTTCAAAGACGTGAGAGCGCACTATAGAAAGGCTCTGCACGGCACTACAGTAGAAGAGGCTCGGTGGAGAGACTGTGTCCGATACGTTCAGGGTAACATGGAGAATGCGGTCGGAGCTCTATACGTGCGGGAAACCTTCTCTGGAAACAGCAAACGCATGGTGGGAGAACTGATCAAGAAGATTCAGGAAGCTTATGTGGAAACTCTGGAGGAACTGAGCTGGATGGATGAACAGTCCAAAGTGAAGGCCAGAGAGAAGGCCATGGCCATATCAGAACAGATTGGTTATCCCGACCACATCCTTGAAGAGGAAAATAAGAAGCTGGACCAGGAATATGCTCACCTTAATTTCAGTGAGGAAAACTACTTCGAGAACATTCTGGAAAACCTGGCAGCATCGGCTCAGAAAGGTCATAAAAAGCTGCGGGAGCCCGTGGATCCTGACATGTGGATTATTGGTGCGGCAGTGGTCAACGCCTTTTACTCACACAACAGAAATCAGATTGtgtTTCCTGCTGGCATCCTTCAGCCTCCGTTCTTCAGTGAGAAACAGCTGCAAGCTCTAAACTTTGGAGGAATCGGGATGGTTATAGGACATGAAATCACTCATGGATTTGATGATCACGGCCGTAATTTTGACAAGGATGGAAACATGTATAACTGGTGGAGCAACTACTCTGCTGAACGCTTCGAGGATCAGTCTAAATGCATGGTGGAGCAGTACGGCAGATTCAGCTGGAAACTTGCAGGAGGCCAAAATGTCAGTGGTATTACGACATTAGGAGAAAACATCGCTGACAACGGTGGAGTTCGTCAAGCTTATAAGgCGTATGTAAAGTGGGTGGAGAGGGAAGGCGAGGAGCCCCGTCTTCCCGGACTGGATATGAATCACAAACAGCTCTTCTTTCTGAACTTTGCTCAGGTCTGGTGTGGTGCTTGTCGCCCTGAGTACGCCATTCAGACTATCAAAACAGACCCACACAGCCCTCTGGAATACAGGGTTTTAGGTTCCCTCCAGAACTTTGAGGCATTTTCTGAAGCGTTTCACTGTGCGCGAGGAGCTCCCATGAACCCCGAGGAGAAATGTCGAGTGTGGTAACCTGCGTTCAGAGTTACAGGGGTCTGTGTGTATATTTTGTTGGGACGAGGCAGCGATGAGGAGAGCTTGGATCATATAATGTCGTGCTATTATTCCGCAGTGGCAGCTGCCTGTCTGTTAGTCTGATGTGACAGACACGAGCAAGGTGTCAGACACCTACATGTGTGATGCATAGATGTCTACTGTGAACTTTCCAAAAGCGCACATATAACCAACAAGTGCAGGCGTCGTCAACGTGCACAGTGAGGGTGTTGTTTTTCTGAAAAAGAGGCATGCTTTCTCCTTGTCTATTTATGAGCGTTTCCTTCTGGACACCTTATTAATTTTGGCACCGAAAACacacgtgaaaaaaaaaaagcgaaatagtttgattgcgacggattatttttttttccagattatGTAAACGGATAAATCCCTCGCTTGGCTTTTCAGTTTCTGTCGGCTCTCCAAGAAGACATCCGTTGTGCTTGAGCAAACCCGAAATTAGCCAACAACTGGAGGCTTGGAGGAAGACGGAGATTGTGGTTTTTTGAATAGAGCCCAGTCAAGGCATCAAGTGTCTTTTCATAATAAGCAGCCTTGGAAATATTTCGAGTGTGCTGGAAGATTTTGTTTTCTAAAGCATGCATTGGCGAAAGCGAGAGTCTCATTGAGCGCAGTTCTCCCCCCCCctcttctccaaaaaaaaaaaaaaa
>TCONS_00007121
tcacTCAGTCAGAGGAACATCTGAGCAGACAGACAGAGCCTCTCCACATCCAGCTGTCCGGACGCTGATTCatttcaccacacaccagctctGGGTGCAAACTCAGGAGGGGTGTTTGGGAAATTGAAAGGCATCCTAAAAGGGCCAACCAGGACTCCATCATTAGAGAGCTCCAAGAATGGGAAAATCAGAGAGCCAAATGGATATCATGGAGAAAAGCACCAAACCGAGAAAGCATCGCTGGACTGTAGTGGAAATCGGACTGTCTGTGATTGTGCTTCTGATGAGCTGTGCACTGGCTGGACTCATAGTGCTCTACACTTCAGCGCTGAGAGGGCTGAAATATCGATCAGACGCCGACAGCAATGTCTGTACAACCCCACAGTGTGTCACTGCCGCGGCTCGTCTGCTCCAGAACATGGACCCCAGTGTGGACCCGTGCCAGAACTTTTATCAGTACGCCTGTGGAGGCTGGATCGAGCGGCACGTCATTCCTGAAACCAGCTCACTCCACAGCGTCTTCAACATCCTCCGAGACGAGCTGGAGATTGTGCTCAAGGGAGTTCTGGAGATGGAAAATAAGGATGACAGAGAGGCCTTCAAGAAAGCCAAAACACTCTACAGCTCATGCATGAACGAGATTCTGATCGAGCAGCGCGACTCGCAGCCTCTACTCCGGCTCATTGACAGCATTGGCGACTGGCCCGTGGCTTCAGAGGTCTGGAATGGCACATCAGAGCAGACGTGGAGCCTTGAGGACACGCTGGCTGTTCTGAACGGTCGCTATAATAAGAAGGCTGTGCTGGAGATGTTCGTGTGGCCAGATGACCGCGACTCCAGCCGCTACATCATCCATGTCGACCAGCCAGCTTTAGGAATGCCTTCAAGAGATTATTACCTCAGCGATGGGAATTACAAAAAGGTACGCGAGGCCTACCTGGAGTTCATGGTTTCAATGGCGAGGATTGCAAGGGAAGACAGAAATTTGACCCAAGATGAAGAGCGTGTGTTGGAGGACATGTCTCAAGTCCTGGAGCTGGAGACAGACATCGCTAACGCTACCTCACCAGCAGAAGAACGCAATGACATCACTGTGCTCTACAACAAGATGACGCTGAGAGAAGCGCAGCAAACGTTCAACCTCAATggCTTTAACTGGACGCGCTACATCCAGGGTATCATGTCCAGCGTGTCCATTTCAGTGCAATCAGATGAGCCCATTGTTATTTACTGCTCCCCTTACCTGGAGAAGCTCAGCGAGGTCCTGTCCAAACACAGCCACAGGACTCTGCAGAACTATCTGGTGTGGATGCTGATCATGGACAGGGTCAGCAGTATGAGCCGTCGCTTCAAAGACGTGAGAGCGCACTATAGAAAGGCTCTGCACGGCACTACAGTAGAAGAGGCTCGGTGGAGAGACTGTGTCCGATACGTTCAGGGTAACATGGAGAATGCGGTCGGAGCTCTATACGTGCGGGAAACCTTCTCTGGAAACAGCAAACGCATGGTGGGAGAACTGATCAAGAAGATTCAGGAAGCTTATGTGGAAACTCTGGAGGAACTGAGCTGGATGGATGAACAGTCCAAAGTGAAGGCCAGAGAGAAGGCCATGGCCATATCAGAACAGATTGGTTATCCCGACCACATCCTTGAAGAGGAAAATAAGAAGCTGGACCAGGAATATGCTCACCTTAATTTCAGTGAGGAAAACTACTTCGAGAACATTCTGGAAAACCTGGCAGCATCGGCTCAGAAAGGTCATAAAAAGCTGCGGGAGCCCGTGGATCCTGACATGTGGATTATTGGTGCGGCAGTGGTCAACGCCTTTTACTCACACAACAGAAATCAGATTGtgtTTCCTGCTGGCATCCTTCAGCCTCCGTTCTTCAGTGAGAAACAGCTGCAAGCTCTAAACTTTGGAGGAATCGGGATGGTTATAGGACATGAAATCACTCATGGATTTGATGATCACGGCCGTAATTTTGACAAGGATGGAAACATGTATAACTGGTGGAGCAACTACTCTGCTGAACGCTTCGAGGATCAGTCTAAATGCATGGTGGAGCAGTACGGCAGATTCAGCTGGAAACTTGCAGGAGGCCAAAATGTCAGTGGTATTACGACATTAGGAGAAAACATCGCTGACAACGGTGGAGTTCGTCAAGCTTATAAGgCGTATGTAAAGTGGGTGGAGAGGGAAGGCGAGGAGCCCCGTCTTCCCGGACTGGATATGAATCACAAACAGCTCTTCTTTCTGAACTTTGCTCAGGTCTGGTGTGGTGCTTGTCGCCCTGAGTACGCCATTCAGACTATCAAAACAGACCCACACAGCCCTCTGGAATACAGGGTTTTAGGTTCCCTCCAGAACTTTGAGGCATTTTCTGAAGCGTTTCACTGTGCGCGAGGAGCTCCCATGAACCCCGAGGAGAAATGTCGAGTGTGGTAA
>TCONS_00007120
tcacTCAGTCAGAGGAACATCTGAGCAGACAGACAGAGCCTCTCCACATCCAGCTGTCCGGACGCTGATTCatttcaccacacaccagctctGGGTGCAAACTCAGGAGGGGTGTTTGGGAAATTGAAAGGCATCCTAAAAGGGCCAACCAGGACTCCATCATTAGAGAGCTCCAAGAATGGGAAAATCAGAGAGCCAAATGGATATCATGGAGAAAAGCACCAAACCGAGAAAGCATCGCTGGACTGTAGTGGAAATCGGACTGTCTGTGATTGTGCTTCTGATGAGCTGTGCACTGGCTGGACTCATAGTGCTCTACACTTCAGCGCTGAGAGAGCGTTTTAACATAAACGATTCTTCAAAAGGGCTGAAATATCGATCAGACGCCGACAGCAATGTCTGTACAACCCCACAGTGTGTCACTGCCGCGGCTCGTCTGCTCCAGAACATGGACCCCAGTGTGGACCCGTGCCAGAACTTTTATCAGTACGCCTGTGGAGGCTGGATCGAGCGGCACGTCATTCCTGAAACCAGCTCACTCCACAGCGTCTTCAACATCCTCCGAGACGAGCTGGAGATTGTGCTCAAGGGAGTTCTGGAGATGGAAAATAAGGATGACAGAGAGGCCTTCAAGAAAGCCAAAACACTCTACAGCTCATGCATGAACGAGATTCTGATCGAGCAGCGCGACTCGCAGCCTCTACTCCGGCTCATTGACAGCATTGGCGACTGGCCCGTGGCTTCAGAGGTCTGGAATGGCACATCAGAGCAGACGTGGAGCCTTGAGGACACGCTGGCTGTTCTGAACGGTCGCTATAATAAGAAGGCTGTGCTGGAGATGTTCGTGTGGCCAGATGACCGCGACTCCAGCCGCTACATCATCCATGTCGACCAGCCAGCTTTAGGAATGCCTTCAAGAGATTATTACCTCAGCGATGGGAATTACAAAAAGGTACGCGAGGCCTACCTGGAGTTCATGGTTTCAATGGCGAGGATTGCAAGGGAAGACAGAAATTTGACCCAAGATGAAGAGCGTGTGTTGGAGGACATGTCTCAAGTCCTGGAGCTGGAGACAGACATCGCTAACGCTACCTCACCAGCAGAAGAACGCAATGACATCACTGTGCTCTACAACAAGATGACGCTGAGAGAAGCGCAGCAAACGTTCAACCTCAATggCTTTAACTGGACGCGCTACATCCAGGGTATCATGTCCAGCGTGTCCATTTCAGTGCAATCAGATGAGCCCATTGTTATTTACTGCTCCCCTTACCTGGAGAAGCTCAGCGAGGTCCTGTCCAAACACAGCCACAGGACTCTGCAGAACTATCTGGTGTGGATGCTGATCATGGACAGGGTCAGCAGTATGAGCCGTCGCTTCAAAGACGTGAGAGCGCACTATAGAAAGGCTCTGCACGGCACTACAGTAGAAGAGGCTCGGTGGAGAGACTGTGTCCGATACGTTCAGGGTAACATGGAGAATGCGGTCGGAGCTCTATACGTGCGGGAAACCTTCTCTGGAAACAGCAAACGCATGGTGGGAGAACTGATCAAGAAGATTCAGGAAGCTTATGTGGAAACTCTGGAGGAACTGAGCTGGATGGATGAACAGTCCAAAGTGAAGGCCAGAGAGAAGGCCATGGCCATATCAGAACAGATTGGTTATCCCGACCACATCCTTGAAGAGGAAAATAAGAAGCTGGACCAGGAATATGCTCACCTTAATTTCAGTGAGGAAAACTACTTCGAGAACATTCTGGAAAACCTGGCAGCATCGGCTCAGAAAGGTCATAAAAAGCTGCGGGAGCCCGTGGATCCTGACATGTGGATTATTGGTGCGGCAGTGGTCAACGCCTTTTACTCACACAACAGAAATCAGATTGtgtTTCCTGCTGGCATCCTTCAGCCTCCGTTCTTCAGTGAGAAACAGCTGCAAGCTCTAAACTTTGGAGGAATCGGGATGGTTATAGGACATGAAATCACTCATGGATTTGATGATCACGGCCGTAATTTTGACAAGGATGGAAACATGTATAACTGGTGGAGCAACTACTCTGCTGAACGCTTCGAGGATCAGTCTAAATGCATGGTGGAGCAGTACGGCAGATTCAGCTGGAAACTTGCAGGAGGCCAAAATGTCAGTGGTATTACGACATTAGGAGAAAACATCGCTGACAACGGTGGAGTTCGTCAAGCTTATAAGgCGTATGTAAAGTGGGTGGAGAGGGAAGGCGAGGAGCCCCGTCTTCCCGGACTGGATATGAATCACAAACAGCTCTTCTTTCTGAACTTTGCTCAGGTCTGGTGTGGTGCTTGTCGCCCTGAGTACGCCATTCAGACTATCAAAACAGACCCACACAGCCCTCTGGAATACAGGGTTTTAGGTTCCCTCCAGAACTTTGAGGCATTTTCTGAAGCGTTTCACTGTGCGCGAGGAGCTCCCATGAACCCCGAGGAGAAATGTCGAGTGTGGTAA
>TCONS_00007123
AACTACTCTGCTGAACGCTTCGAGGATCAGTCTAAATGCATGGTGGAGCAGTACGGCAGATTCAGCTGGAAACTTGCAGGAGGCCAAAATGTCAGTGGTATTACGACATTAGGAGAAAACATCGCTGACAACGGTGGAGTTCGTCAAGCTTATAAGgCGTATGTAAAGTGGGTGGAGAGGGAAGGCGAGGAGCCCCGTCTTCCCGGACTGGATATGAATCACAAACAGCTCTTCTTTCTGAACTTTGCTCAGGTCTGGTGTGGTGCTTGTCGCCCTGAGTACGCCATTCAGACTATCAAAACAGACCCACACAGCCCTCTGGAATACAGGCAAGATTTCTGAATTAAAGATGAAAACAAATCTGGATACAAGTCacaataaaatacatacattGCGTTAGATTGCATAAATTATTGAACATGCAGAAAGGAAATATCGAGCTATTAGAAAATTTAGAAGTACAAATGACTTGGCAAGAAtcattaaaaattgtaataaaactaAGCTTTCAATTAAA

Function

symbol description
mmel1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human MMEL1 (membrane metalloendopeptidase like 1).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-101112-2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human MMEL1 (membrane metalloendopeptidase like 1).

Ensembl:

ensembl_id ENSDARG00000105389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007119 False 3375 mRNA 0.49 25 40530748 40605868
TCONS_00007121 False 2446 mRNA 0.51 23 40544269 40605170
TCONS_00007120 False 2476 mRNA 0.50 24 40544269 40605170
TCONS_00007123 True 517 lncRNA 0.41 4 40597563 40603087

Neighbor

gene id symbol gene type direction distance location
XLOC_003662 NA coding upstream 96668 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding upstream 219002 40306579 ~ 40311746 (+)
XLOC_003661 si:ch211-193i15.1 coding upstream 315194 40208239 ~ 40215554 (+)
XLOC_003660 si:dkey-264d12.5 coding upstream 362370 40148181 ~ 40168378 (+)
XLOC_003659 NA coding upstream 414102 40111481 ~ 40116646 (+)
XLOC_003666 AL954137.2 coding downstream 12028 40617896 ~ 40641787 (+)
XLOC_003667 slc45a1 coding downstream 43544 40649412 ~ 40674070 (+)
XLOC_003668 errfi1a coding downstream 206722 40812590 ~ 40847615 (+)
XLOC_003669 NA coding downstream 259087 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 coding downstream 283312 40889180 ~ 40889294 (+)
XLOC_003369 CR854846.2 misc upstream 24407666 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27818752 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27836485 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27845149 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27850720 12679732 ~ 12680028 (+)
XLOC_003655 NA non-coding upstream 603876 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 1051481 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 1240114 39287369 ~ 39290634 (+)
XLOC_003671 NA non-coding downstream 285813 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 291458 40897326 ~ 40899889 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 586461 41192329 ~ 41201272 (+)

Expression


Co-expression Network