G1722415 (LOC106609312)


Basic Information

Item Value
gene id G1722415
gene name LOC106609312
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27392367 ~ 27392788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1973266
CTGGTCTTGATTGAGTGATTCCCCGTGTTTCAAACGCTTCCTGTAGTCTTCCAATTTAATCTttttttttctccagGTTGCGGATCTTGTGCTTGAGGCAGATGAGGCCGTCCTCGATGTAACTCTCGTAGCCCTGGTAGATGGTGGTGGAGGCTGCCAGGGCCAGCTGGAGAGGACTCAGTCCACCGGGGGAGCCAATCTTGGGGCTCCCCTGCCTCCCCTTCTCTGAGCACTCAGGTGAAGGAGAGACATCCCGGGCTGGGGATGGAGAAAGCTGCACCATGTTCAGACTCTC

Function

NR:

description
caprin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1973266 True 295 lncRNA 0.55 2 27392367 27392788

Neighbor

gene id symbol gene type direction distance location
LOC110500167 NA coding upstream 80758 27309199 ~ 27311609 (+)
stab2 stab2 coding upstream 181518 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 231330 27152601 ~ 27161037 (+)
cped1 LOC106609304 coding upstream 241988 27066938 ~ 27150379 (+)
LOC110500161 LOC106609303 coding upstream 331807 27047963 ~ 27060560 (+)
LOC110500177 LOC106576158 coding downstream 263588 27656376 ~ 27685960 (+)
LOC110500180 LOC106609324 coding downstream 497677 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 512293 27905081 ~ 27923178 (+)
LOC110500182 LOC106609326 coding downstream 545031 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 861837 28254592 ~ 28257603 (+)
G1722405 NA non-coding upstream 9838 27382196 ~ 27382529 (+)
G1722346 NA non-coding upstream 99436 27292337 ~ 27292931 (+)
G1722328 NA non-coding upstream 124476 27266582 ~ 27267891 (+)
G1722323 NA non-coding upstream 139631 27251154 ~ 27252736 (+)
G1722313 NA non-coding upstream 152743 27238484 ~ 27239624 (+)
G1722524 NA non-coding downstream 173091 27565879 ~ 27570770 (+)
G1722555 NA non-coding downstream 210591 27603379 ~ 27624817 (+)
G1722565 NA non-coding downstream 232232 27625020 ~ 27626220 (+)
G1722579 NA non-coding downstream 251557 27644345 ~ 27647281 (+)
G1722581 NA non-coding downstream 254614 27647402 ~ 27648488 (+)
G1722079 NA other upstream 570432 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1061274 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1350524 26038302 ~ 26041843 (+)
G1720853 NA other upstream 1755778 25636335 ~ 25636589 (+)
G1720836 NA other upstream 1780099 25611816 ~ 25612268 (+)
LOC110501048 LOC106609163 other downstream 929732 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 other downstream 948713 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 1820031 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1865472 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2497498 29890286 ~ 29891957 (+)

Expression


Co-expression Network