G1722607


Basic Information

Item Value
gene id G1722607
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27715429 ~ 27719033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1973466
GTCACAGATAGGGTTTAATTAAATTTGTGTAGATAATCTCTCAGAAAACCAGAAGCAGGTAGTTTTAAGAAAGGTATTTTACATTTACAGAGTTGTCTCCAGGGGCAACACATTATACAATACCATTCTAAAATGGTTGGACTTTTTTCTTCTTTTCACATGAAAAAATATTGTACATCATTAAAGCAATAAAAAATCCCAATAGTTAGTACATCCCAAACAATGGTAACAACGATATACAATACAAGCAGATTGTCATCAGAAGTTATTGGATTCAGAACAGCATGCCCCAAGGAACGAACGAGAAATACAACGGCAAAAATTTAGAGTTTTCAAAGAAAACAGGAAATACAGAATACAGCTATTGAGGCACAGTGCATAAAAAGTGAGACATTTCAAAGTTATGGTTGAAAGAGAATAGTAAGAAATGGcgaaaaacaaacagacatttCCCCCCGCAGAAATCTTTAAAAGAAAGTACGATGATACagacattgaccccccccccccccgcttaaGCATGTTCCCAGGATGCTTACCCCTGGCTCTATCCACACGCACACAATCGCACACAGGtacacacccacatacagtatTCACACGCACTTATCTGTAAACACTCTAACCTATTCCTACAACAGCCCACTAATCTGCCCCATTAAGACATAGCCCAGCTAGCACAATGTGCAGAACAGCAGTGAAAGCCCAGTGACCCTGGGAATAAAATGTAGCCAGAGGGGATGTTGATATATAATGTCtaatgagagcagagagagaacaaacagggATGTTGTCATGTTATGATAACCACACTTTGAGCTCAGCTAGCCAACCAAACGCTTCCAGACGAGCAGAGGAAGGACGCTCATTCACAAGTGCTTTCTAAATAAAGATATTACCCTTTTTTACGCAGACAACTGCTTGACAACATGAACGCGTTAATAATAGCTACACAAGGTGTGGGTAACCCCGTGCACTCTAAAAAATGCTAGGCTAAAAACAACCCAATTTAGCGTTGGTTAAATAGTGGACAGAACGCATGttgggttattttgacccagccagttgggttGCATGAATGACCCAACATGTTGGGTAGTTGGGATTATCCAAACATGGGTTAATGTAACCATCAGTTGGGTATTTTTTACTCTCATGCTGGGTTGACCTAGAAGCTGGGTCTTATTTAACGTAATCCTTAGGTTATTTTCAGGAGGCGTGGTTTATTAGGGGAGTGGCTTTAAGCAAGATCTTATTGGCCACCCGTGAGACTAAATGTCACTCCTGTTCATCATCTTAAATTTACATACTGCAAATTAAAATGTCAATAACATGCTTTTCACACATTCGTCTGTAATATTAAGATTCTTTATTACTCATTATAAGGTATACCACCTTATTGTATCCCAACAATGGGATTTATATAGGTTTTAGGGAACATATACACTTCTGTAAGCGTCATTGAagctacatttttttaaatgttcaacCTTAATATGTGATAACTATGCAACCGAACAGATGAAtaggaatgacatttactttcATGGGTGGttaaaaataactatctgaaagccacgccCCTACTAAACTACACCTTGTGTCTTCTGATCTGACCCGCTGGGTCATaactcaataacccagcatcaataaccctgAAGTTTTTAAAGAAAACAACTTGTGAGTTgagtcaaccaaacaacccagcattttTTAGAGTGTAACATAGTGCAGCTATTATTATACATTAATAAGCATTTATTAGCCTATTCAAGAAAGAACTGAACTTAGAATAAAATTTAAACATTGTTTCTGCACTGGCtctttttttaaacaacacacacacatatttaacaACATTTGAAGTAATCCTTGATTGCTAACATGTTTTTACAATGACAggtgatgtagatgtacagtTCCGACTTCTTGACCAGTTACGGTACATTAGGCCTACCTACACCTCATCGTCATCCATTGGTCCactaagagttcaaagttcattcCCATGATACATCTCTCCCAGAAAGGGCACCATGGAGCAGCGAGAACATTCCAGACACCGCTGTTTCTGTACAGGGTCGGGAGCAAACACATTTGCCAATCCGCTCCGTTGGCTATTACGTATTTCCAGTAATCCGTACCAGGAATCAAAATCGTGCAGACTTCCCAACCGGTGACCTCGGAATAAACTTGTCAGGATCACGGCACATGAGCCAGGGATGAGAGGGTGAGCTGATTACACATGCaacgagggatggaggggggaagaaggagagagggggaaaaacaagggaaaagaggaagagaagagatcCCTCTCCCCTGGTTAAGAGGCTTACTGAGAGTTGTAATGAGACCCAGGGGAGTGGTGTCAACACGTTTGACACTTATACTCACACACAGCCTGTGGCAGAGACCTCCCgctgccctcacacacacactttgatctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaccaccatgcccaaggccagagagagagagagagagagagagagagagagagagagacagagagagagtgaaactaGAGGGGCAGAGGAAAAGAGGAATCAAGAGAAAAAGGGATGAGGGGAAAGCAGTGTTGTAATCTGGAGTGCAGGAAGTGTGATATCAGAGTACTGGCAGGGGTATCCTTTCTGTGCTGGCAAACAGCTCCACAAAGTCGAACATGGACATTGGGTTCATGTTCTGAAACCCTACTAGTAAGTGTTCAATCACTCCTCCGGGAAGGTCTCAAATGAAGGGTGGACCGCACTGTCACAATGTCAAAATGTCACCACTGAGCAACTTCCACTGGTGGCTTAACAGAGTCCTCTATGAGGAAcaagagagaatgagagttatCCAGTGTCTTCTTCTGAGAGAAAGACTGTGAGTCCAAACAGTGACACAGGAGACACTGTTCCCCCTGTCCTCTTCTCTATCTGACAGCCAGGTCAGATTGTCAGTGCAGTAGAAGTGCAACAGAAGATTCACAGACTAATGCTGACATGTCCATATGAGAAATGAGGCATCTGGGGTCTGTCTTTTGCCTTACTTTTCTTTTGTTGAAATAAAGGAATGACAGTATATAAAAGAACATCGATGGATTTGCCAAGTGAGGATTGGCAACACCTCGTCTGTAAGAGACTTGGGCTTGTGTGTGTTgtgccacacacacccacacgcacacacacacacagcatccgtTAGAGCcatgactatatacagtactCCACCACACCTGTCCACCACCCTCACCTATCTGCCTTCCCACCACTTGTCTCCTGATTGGAGGGGGGCTCAGCAGGGCGGGGCTTCTCTAGTCATGTGGTCCTGGTGGGATTGGGCAGGTCGAAGACGATGGGCGGGTTCATGGGCTGGAAGTTGACGGTGCAGGCCGAGGCGTTGACGAACGTGGTGGTGCCGTCTGTCATCATA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1973466 True 3580 lncRNA 0.43 2 27715429 27719033

Neighbor

gene id symbol gene type direction distance location
LOC110500177 LOC106576158 coding upstream 29469 27656376 ~ 27685960 (+)
LOC110500167 NA coding upstream 403820 27309199 ~ 27311609 (+)
stab2 stab2 coding upstream 504580 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 554392 27152601 ~ 27161037 (+)
cped1 LOC106609304 coding upstream 565050 27066938 ~ 27150379 (+)
LOC110500180 LOC106609324 coding downstream 171432 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 186048 27905081 ~ 27923178 (+)
LOC110500182 LOC106609326 coding downstream 218786 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 535592 28254592 ~ 28257603 (+)
LOC110501048 LOC106609163 coding downstream 591985 28311018 ~ 28335924 (+)
G1722626 NA non-coding upstream 2795 27712393 ~ 27712634 (+)
G1722622 NA non-coding upstream 8621 27706586 ~ 27706808 (+)
G1722619 NA non-coding upstream 11342 27703759 ~ 27704087 (+)
G1722612 NA non-coding upstream 24472 27690730 ~ 27690957 (+)
G1722581 NA non-coding upstream 66941 27647402 ~ 27648488 (+)
G1722630 NA non-coding downstream 10772 27729805 ~ 27730059 (+)
G1722654 LOC106609323 non-coding downstream 43997 27763030 ~ 27767440 (+)
G1722671 NA non-coding downstream 101413 27820446 ~ 27821563 (+)
G1722756 NA non-coding downstream 283234 28002267 ~ 28023525 (+)
G1722784 NA non-coding downstream 363237 28082270 ~ 28082564 (+)
G1722079 NA other upstream 893494 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1384336 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1673586 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2078840 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2103161 25611816 ~ 25612268 (+)
LOC110500183 LOC106609180 other downstream 622468 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 1493786 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1539227 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2171253 29890286 ~ 29891957 (+)

Expression


Co-expression Network