G1722654 (LOC106609323)



Basic Information


Item Value
gene id G1722654
gene name LOC106609323
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 27763030 ~ 27767440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1973516
TGTTCTTCTGCTActgttttatttgaatttgttctttactggatTTTCATGGACCAAACAATGGCAAAACACTGTGATACAGTTTCTCTCTTTGGGTACAACCGACTAACACAAACGTAAAAATTATCCCTCTATAAAATGGACTAAagtacctacatacagtatctctctttctccacctcgaTCTCACAAGCTactcacacacggacacacgctgtctcattctctcacacacatacacagaacatgCACTCTTTCTGTatcacactgtctcacacacgcacacacacacacacgcacacaatagAATACATTCTCCGGAAAAGTCAGTCATACATGGTTTTGCATTTCATACCGTTTTTCATCATCATCAAACACACTAAACGCCCAAAACATCCCTCAACAGGAAGTGGGCGCATCGTACCAACATTAGCTACACCTCTGCAGGCGGCAACCATTTTGAGTGGACTGAGTGGACAAACACCTTGGTTGCATCTGAAAACATTATTAGCTGTCAAATCCATGCTTCCTCCACCCTTGTTAGCTCAAATCCACTCAAAGCTCATTGGAGGAGAGGTTGCAAGGTCCCTCCCCCGGACCACCTCCTCCAATGAGCTTTGATTTGAAGACCAGTAACATTTTCTGACACAACCCTACATGGGCCAAGTTATCATTCTGATTTGAGAGATTTTTGTAATGTCCTTGTGTAGAGATTCTGTCAAACAGAACACTGACACCTCATCAGAAGAAACTGCTCTACACACAACAGTGGGGGTCACAATTAGACTGGGCTGAACAGGTCCTGGATCAGTGCTAGGGCATAATGCAGAATTTATGAATGAGTGACTATATCTGTTCCCATATCAGTGGCCTTCAGTATATGGCCTCTAGGTAAGAAGATACAAGCCAGATAATTATGCTTATCATTCTTGTGCCCAGCACAAAGAATTTAAGTTGTTTATAACcgtgtagtagtggagtattaGCAGTTTAATAGGTGTGTAATAGATGTACtgtttataaactgggtggctcgagccctgaatgctgattggctcgagccctgaatgctgattggctgacaggtatatcagaccgtatgccacgggtatgacaaaacatgtatttatactgctgtaattacattggtaaccagtttataatggcaataaggcacctcgggggtttgtggtatattgccaatataccacaccccctcgggccttattgaaCGATGAAAGTCATATTTTGTCAGAACGTTTTACTACTTGAGGTCAGTTTGGGCTCTTTCTGGGTTATGGTTACAGTTGCAAGTGCTATGTACATACAGATACTCTCATAGACATCACAATACTTTCAAACAGACCTCTGTCCCTCTGCTACTACATTCACCTCCAAATCAACAGTCTCGTCATCATACAATACATATTTGCTCCACTTGCATTGTGCAGAAATATAAACAAACTAACAGATGTGTTATAGATATTAAATCAACAGTCTAGGTTGATGACTTACAGAAACTGGGAGAAGTCCAAATAGGACAGATTGAGAGTGGACACTCGTAAAAAGCAGGTGGTTTTGAGTGTGCACTTAGTGCCATCATTAAAGAAGCTTTACACAAAACACCCCTTTCCTCTGGCAGCTAGTCAGGAGAGTCTTTAAGGGATGAGGCAGAGTTAGTAGATGGGAGCACACACACAACTAAAATAGTAGTGGGTCGTTAAGGACATTTCCCTTTAAATGATTACTTACTGGCAATACTGCTTTTCAGGCCAAATGGGTGGATTTGACGGTGTCTGTCTAAAGATATTGAATGCTGGGTTTTTTTGTTGTGAGAACAAAAGGGGACAtatttttgtctctctcttttgctACAACCAAGGTGAAACATTTCTATACAACACAAAACATAAGGAATAATGTAACTTAGATTTTTTTCTACAGTTCACAATATAAAAATTCAAGTGCAATTAAAGTTCCAAATATGAGTTACATCACATACATTTCTCTCTATAGCAACGTCTGTTACTTGCAGGTAGTTTTTTTCATCTTGTTATATATCTttcaaaataaaattaaaaagcGACTTTTTTGAAAATCAAACTTATTCGTTCACTGTACTCAGTTTGAGGTGGAATGGTCTTGGATGCTGAAATTAGAAATGTCTTTCGAAACGATTTCCCATGTGAAAATGTGGATGTAAAATATGATTTAAGTGCACCAATCGTTTTTTTTTGGGTGCACGCCAGGGGCCtttcaaaataacaaaataaagatACATCAATGTACCTGCGTGTGACGTCACTCTCGCACACCATCTACGTGCACATACGTatgctcacacaaacacaaatatacatacgtacatacatacacatacattttACTTGTAGCCAACATGTCTGTATACGTACATATATATCAAACATCCATGTTGTGGGCTTCTGCAAGTTCTAACACATATAAAtataaccaaaacaacaacaacaacacaaaaacaaaccaAACCAGAAGTACAGGGGGAAAGATGGAAATGAGGACTGCAGACAAAAAGAGGGAGACGGTTCTCTGTTCCTGTGCAGGGAATGCTGGGATAGCGAGCACGAGGAACTCCTGGTAGGGTTGGGGGTGTAAGAGAAGTATATTGGTGTAGAAGAAGTGTTTCAGAGTAGAGGGGGTGTAGAAGAGAGGGATAGATTGGCGGGTTGGGTTGTAGGAGAGATGTAGGGGTATAGACGTGGGGGAGTAGAAGACATATGAGGATGTTGACAGGGGTAAGGACgtaggtgaagaggagggaggagtagatggTGGAAAGGGGACGTTGGATAAGCATAAGGGGTAAGTAAGCGACTGGGTAACAAACAGGGGGCGTGGCAGTTTATTTGTACGGCCGTAGGAACCGTGTGACTTTGGAGCGCAGCAGCTTGATGAACGAGCGGGGGAACATGTCTTTGGACTCCTGTGCCGTGTACCTGAAGTAGTTCTGGGGGTGAGCCAGAACATCAAACAGGGCTTTGATCAGTTTTTTATcctgcagggaggagagggggaggg
>TU1973517
TGTTCTTCTGCTActgttttatttgaatttgttctttactggatTTTCATGGACCAAACAATGGCAAAACACTGTGATACAGTTTCTCTCTTTGGGTACAACCGACTAACACAAACGTAAAAATTATCCCTCTATAAAATGGACTAAagtacctacatacagtatctctctttctccacctcgaTCTCACAAGCTactcacacacggacacacgctgtctcattctctcacacacatacacagaacatgCACTCTTTCTGTatcacactgtctcacacacgcacacacacacacacgcacacaatagAATACATTCTCCGGAAAAGTCAGTCATACATGGTTTTGCATTTCATACCGTTTTTCATCATCATCAAACACACTAAACGCCCAAAACATCCCTCAACAGGAAGTGGGCGCATCGTACCAACATTAGCTACACCTCTGCAGGCGGCAACCATTTTGAGTGGACTGAGTGGACAAACACCTTGGTTGCATCTGAAAACATTATTAGCTGTCAAATCCATGCTTCCTCCACCCTTGTTAGCTCAAATCCACTCAAAGCTCATTGGAGGAGAGGTTGCAAGGTCCCTCCCCCGGACCACCTCCTCCAATGAGCTTTGATTTGAAGACCAGTAACATTTTCTGACACAACCCTACATGGGCCAAGTTATCATTCTGATTTGAGAGATTTTTGTAATGTCCTTGTGTAGAGATTCTGTCAAACAGAACACTGACACCTCATCAGAAGAAACTGCTCTACACACAACAGTGGGGGTCACAATTAGACTGGGCTGAACAGGTCCTGGATCAGTGCTAGGGCATAATGCAGAATTTATGAATGAGTGACTATATCTGTTCCCATATCAGTGGCCTTCAGTATATGGCCTCTAGGTAAGAAGATACAAGCCAGATAATTATGCTTATCATTCTTGTGCCCAGCACAAAGAATTTAAGTTGTTTATAACcgtgtagtagtggagtattaGCAGTTTAATAGGTGTGTAATAGATGTACtgtttataaactgggtggctcgagccctgaatgctgattggctcgagccctgaatgctgattggctgacaggtatatcagaccgtatgccacgggtatgacaaaacatgtatttatactgctgtaattacattggtaaccagtttataatggcaataaggcacctcgggggtttgtggtatattgccaatataccacaccccctcgggccttattgaaCGATGAAAGTCATATTTTGTCAGAACGTTTTACTACTTGAGGTCAGTTTGGGCTCTTTCTGGGTTATGGTTACAGTTGCAAGTGCTATGTACATACAGATACTCTCATAGACATCACAATACTTTCAAACAGACCTCTGTCCCTCTGCTACTACATTCACCTCCAAATCAACAGTCTCGTCATCATACAATACATATTTGCTCCACTTGCATTGTGCAGAAATATAAACAAACTAACAGATGTGTTATAGATATTAAATCAACAGTCTAGGTTGATGACTTACAGAAACTGGGAGAAGTCCAAATAGGACAGATTGAGAGTGGACACTCGTAAAAAGCAGGTGGTTTTGAGTGTGCACTTAGTGCCATCATTAAAGAAGCTTTACACAAAACACCCCTTTCCTCTGGCAGCTAGTCAGGAGAGTCTTTAAGGGATGAGGCAGAGTTAGTAGATGGGAGCACACACACAACTAAAATAGTAGTGGGTCGTTAAGGACATTTCCCTTTAAATGATTACTTACTGGCAATACTGCTTTTCAGGCCAAATGGGTGGATTTGACGGTGTCTGTCTAAAGATATTGAATGCTGGGTTTTTTTGTTGTGAGAACAAAAGGGGACAtatttttgtctctctcttttgctACAACCAAGGTGAAACATTTCTATACAACACAAAACATAAGGAATAATGTAACTTAGATTTTTTTCTACAGTTCACAATATAAAAATTCAAGTGCAATTAAAGTTCCAAATATGAGTTACATCACATACATTTCTCTCTATAGCAACGTCTGTTACTTGCAGGTAGTTTTTTTCATCTTGTTATATATCTttcaaaataaaattaaaaagcGACTTTTTTGAAAATCAAACTTATTCGTTCACTGTACTCAGTTTGAGGTGGAATGGTCTTGGATGCTGAAATTAGAAATGTCTTTCGAAACGATTTCCCATGTGAAAATGTGGATGTAAAATATGATTTAAGTGCACCAATCGTTTTTTTTTGGGTGCACGCCAGGGGCCtttcaaaataacaaaataaagatACATCAATGTACCTGCGTGTGACGTCACTCTCGCACACCATCTACGTGCACATACGTatgctcacacaaacacaaatatacatacgtacatacatacacatacattttACTTGTAGCCAACATGTCTGTATACGTACATATATATCAAACATCCATGTTGTGGGCTTCTGCAAGTTCTAACACATATAAAtataaccaaaacaacaacaacaacacaaaaacaaaccaAACCAGAAGTACAGGGGGAAAGATGGAAATGAGGACTGCAGACAAAAAGAGGGAGACGGTTCTCTGTTCCTGTGCAGGGAATGCTGGGATAGCGAGCACGAGGAACTCCTGGTAGGGTTGGGGGTGTAAGAGAAGTATATTGGTGTAGAAGAAGTGTTTCAGAGTAGAGGGGGTGTAGAAGAGAGGGATAGATTGGCGGGTTGGGTTGTAGGAGAGATGTAGGGGTATAGACGTGGGGGAGTAGAAGACATATGAGGATGTTGACAGGGGTAAGGACgtaggtgaagaggagggaggagtagatggTGGAAAGGGGACGTTGGATAAGCATAAGGGGTAAGTAAGCGACTGGGTAACAAACAGGGGGCGTGGCAGTTTATTTGTACGGCCGTAGGAACCGTGTGACTTTGGAGCGCAGCAGCTTGATGAACGAGCGGGGGAACATGTCTTTGGACTCCTGTGCCGTGTACCTGAAGTAGTTCTGGGGGTGAGCCAGAACATCAAACAGGGCTTTGATCAGTTTTTTATcTTTTAGTATCTCTTGGTGATTCTCTGATGCGTAGAGTCTGCCGTCCCGGACAATGTCCTCTATCAGCTGCTGGTAGTCCTCATCATAGGTGACATAAGGGACTTGGAAGCCCTTGCCGCTGTTGCCCTCATTGGACTTGAATTGGATCCAGAGCTTGCGTGAGCGGGAGGTGAAGGCGATTGGTCGCTCGTACGTCTGACACGTCTCATAGGTGGTGATGGAGGTGGGCAGGGCACTCTTCCTCATGACGAGCACGTCTCCACACTCGTCTTCGATTGGGAGGAAGATCTCAGGCACCACGATGAGGATGCGTCTCTTGTGAGGGGGGTTGATGGTCCAGATACAGTCTACATTGGAGGGGTAGTCCCCGGGGTAGTTAGGAGACTCAATAAAGCCTGTAAAGTCCCCCAGCTCACCGCCACACACCTGGTCTGAGACAGGGAGAAGAGACTTGGATGAGTCAGGAAGCACTGGAGACCATGGCTTTGAATTGAACTAATTTAGCAGCAAG
>TU1973519
TGTTCTTCTGCTActgttttatttgaatttgttctttactggatTTTCATGGACCAAACAATGGCAAAACACTGTGATACAGTTTCTCTCTTTGGGTACAACCGACTAACACAAACGTAAAAATTATCCCTCTATAAAATGGACTAAagtacctacatacagtatctctctttctccacctcgaTCTCACAAGCTactcacacacggacacacgctgtctcattctctcacacacatacacagaacatgCACTCTTTCTGTatcacactgtctcacacacgcacacacacacacacgcacacaatagAATACATTCTCCGGAAAAGTCAGTCATACATGGTTTTGCATTTCATACCGTTTTTCATCATCATCAAACACACTAAACGCCCAAAACATCCCTCAACAGGAAGTGGGCGCATCGTACCAACATTAGCTACACCTCTGCAGGCGGCAACCATTTTGAGTGGACTGAGTGGACAAACACCTTGGTTGCATCTGAAAACATTATTAGCTGTCAAATCCATGCTTCCTCCACCCTTGTTAGCTCAAATCCACTCAAAGCTCATTGGAGGAGAGGTTGCAAGGTCCCTCCCCCGGACCACCTCCTCCAATGAGCTTTGATTTGAAGACCAGTAACATTTTCTGACACAACCCTACATGGGCCAAGTTATCATTCTGATTTGAGAGATTTTTGTAATGTCCTTGTGTAGAGATTCTGTCAAACAGAACACTGACACCTCATCAGAAGAAACTGCTCTACACACAACAGTGGGGGTCACAATTAGACTGGGCTGAACAGGTCCTGGATCAGTGCTAGGGCATAATGCAGAATTTATGAATGAGTGACTATATCTGTTCCCATATCAGTGGCCTTCAGTATATGGCCTCTAGGTAAGAAGATACAAGCCAGATAATTATGCTTATCATTCTTGTGCCCAGCACAAAGAATTTAAGTTGTTTATAACcgtgtagtagtggagtattaGCAGTTTAATAGGTGTGTAATAGATGTACtgtttataaactgggtggctcgagccctgaatgctgattggctcgagccctgaatgctgattggctgacaggtatatcagaccgtatgccacgggtatgacaaaacatgtatttatactgctgtaattacattggtaaccagtttataatggcaataaggcacctcgggggtttgtggtatattgccaatataccacaccccctcgggccttattgaaCGATGAAAGTCATATTTTGTCAGAACGTTTTACTACTTGAGGTCAGTTTGGGCTCTTTCTGGGTTATGGTTACAGTTGCAAGTGCTATGTACATACAGATACTCTCATAGACATCACAATACTTTCAAACAGACCTCTGTCCCTCTGCTACTACATTCACCTCCAAATCAACAGTCTCGTCATCATACAATACATATTTGCTCCACTTGCATTGTGCAGAAATATAAACAAACTAACAGATGTGTTATAGATATTAAATCAACAGTCTAGGTTGATGACTTACAGAAACTGGGAGAAGTCCAAATAGGACAGATTGAGAGTGGACACTCGTAAAAAGCAGGTGGTTTTGAGTGTGCACTTAGTGCCATCATTAAAGAAGCTTTACACAAAACACCCCTTTCCTCTGGCAGCTAGTCAGGAGAGTCTTTAAGGGATGAGGCAGAGTTAGTAGATGGGAGCACACACACAACTAAAATAGTAGTGGGTCGTTAAGGACATTTCCCTTTAAATGATTACTTACTGGCAATACTGCTTTTCAGGCCAAATGGGTGGATTTGACGGTGTCTGTCTAAAGATATTGAATGCTGGGTTTTTTTGTTGTGAGAACAAAAGGGGACAtatttttgtctctctcttttgctACAACCAAGGTGAAACATTTCTATACAACACAAAACATAAGGAATAATGTAACTTAGATTTTTTTCTACAGTTCACAATATAAAAATTCAAGTGCAATTAAAGTTCCAAATATGAGTTACATCACATACATTTCTCTCTATAGCAACGTCTGTTACTTGCAGGTAGTTTTTTTCATCTTGTTATATATCTttcaaaataaaattaaaaagcGACTTTTTTGAAAATCAAACTTATTCGTTCACTGTACTCAGTTTGAGGTGGAATGGTCTTGGATGCTGAAATTAGAAATGTCTTTCGAAACGATTTCCCATGTGAAAATGTGGATGTAAAATATGATTTAAGTGCACCAATCGTTTTTTTTTGGGTGCACGCCAGGGGCCtttcaaaataacaaaataaagatACATCAATGTACCTGCGTGTGACGTCACTCTCGCACACCATCTACGTGCACATACGTatgctcacacaaacacaaatatacatacgtacatacatacacatacattttACTTGTAGCCAACATGTCTGTATACGTACATATATATCAAACATCCATGTTGTGGGCTTCTGCAAGTTCTAACACATATAAAtataaccaaaacaacaacaacaacacaaaaacaaaccaAACCAGAAGTACAGGGGGAAAGATGGAAATGAGGACTGCAGACAAAAAGAGGGAGACGGTTCTCTGTTCCTGTGCAGGGAATGCTGGGATAGCGAGCACGAGGAACTCCTGGTAGGGTTGGGGGTGTAAGAGAAGTATATTGGTGTAGAAGAAGTGTTTCAGAGTAGAGGGGGTGTAGAAGAGAGGGATAGATTGGCGGGTTGGGTTGTAGGAGAGATGTAGGGGTATAGACGTGGGGGAGTAGAAGACATATGAGGATGTTGACAGGGGTAAGGACgtaggtgaagaggagggaggagtagatggTGGAAAGGGGACGTTGGATAAGCATAAGGGGTAAGTAAGCGACTGGGTAACAAACAGGGGGCGTGGCAGTTTATTTGTACGGCCGTAGGAACCGTGTGACTTTGGAGCGCAGCAGCTTGATGAACGAGCGGGGGAACATGTCTTTGGACTCCTGTGCCGTGTACCTGAAGTAGTTCTGGGGGTGAGCCAGAACATCAAACAGGGCTTTGATCAGTTTTTTATcTTTTAGTATCTCTTGGTGATTCTCTGATGCGTAGAGTCTGCCGTCCCGGACAATGTCCTCTATCAGCTGCTGGTAGTCCTC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1973516 False 3057 lncRNA 0.42 3 27763030 27766206
TU1973517 False 3545 lncRNA 0.43 6 27763030 27767440
TU1973519 True 3115 lncRNA 0.42 4 27763030 27766592

Neighbor


gene id symbol gene type direction distance location
LOC110500177 LOC106576158 coding upstream 77070 27656376 ~ 27685960 (+)
LOC110500167 NA coding upstream 451421 27309199 ~ 27311609 (+)
stab2 stab2 coding upstream 552181 27170703 ~ 27210849 (+)
LOC110500163 LOC106609305 coding upstream 601993 27152601 ~ 27161037 (+)
cped1 LOC106609304 coding upstream 612651 27066938 ~ 27150379 (+)
LOC110500180 LOC106609324 coding downstream 123025 27890465 ~ 27902897 (+)
LOC110500181 LOC106609325 coding downstream 137641 27905081 ~ 27923178 (+)
LOC110500182 LOC106609326 coding downstream 170379 27937819 ~ 27954437 (+)
LOC118942914 NA coding downstream 487185 28254592 ~ 28257603 (+)
LOC110501048 LOC106609163 coding downstream 543578 28311018 ~ 28335924 (+)
G1722630 NA non-coding upstream 32971 27729805 ~ 27730059 (+)
G1722607 NA non-coding upstream 43997 27715429 ~ 27719033 (+)
G1722626 NA non-coding upstream 50396 27712393 ~ 27712634 (+)
G1722622 NA non-coding upstream 56222 27706586 ~ 27706808 (+)
G1722619 NA non-coding upstream 58943 27703759 ~ 27704087 (+)
G1722671 NA non-coding downstream 53006 27820446 ~ 27821563 (+)
G1722756 NA non-coding downstream 234827 28002267 ~ 28023525 (+)
G1722784 NA non-coding downstream 314830 28082270 ~ 28082564 (+)
G1722799 NA non-coding downstream 351575 28119015 ~ 28119380 (+)
G1722834 NA non-coding downstream 419820 28187260 ~ 28187624 (+)
G1722079 NA other upstream 941095 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1431937 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1721187 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2126441 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2150762 25611816 ~ 25612268 (+)
LOC110500183 LOC106609180 other downstream 574061 28341423 ~ 28343734 (+)
G1724234 LOC106609199 other downstream 1445379 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1490820 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 2122846 29890286 ~ 29891957 (+)

Expression



Co-expression Network