G1722756


Basic Information

Item Value
gene id G1722756
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28002267 ~ 28023525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1973628
CTGTTTTTATTAAAGCCTCGACGGGCAATAATACTGAAAAAAGTGAACTCAGAACAGATGGTGCACGGCGAGCCCACGGcctctctttttttgttgtttcctttgtttatttgtcatttttcttcttttttttttgtaagagTACATCAACTCCTGCTTTTATTGTAGCATGAATAACATCAATAAAAGAGAAAAAGAAATATACAACTTATATTACACTGTGTTATGAACAAAATATAAATCTATAACTCTATGTTATATGTACATAATTATCTTTCTCCATTTTGTCAAGTTCAGATGGTCAGATACGTGTTTCTTTTTTGGACTAACTCGGACTTTGTTTTGAGCTCCACTCGTGACATTTGATTGTCTTCAttgttattatcatcatcatcttcatcgcGATCATGGTCACCATCGTCGCTGTATCACCCAACATCACCAGGGCCTATCATCCTGTCAACCTGCTCATGAAAAACGTTGGACTCTATTCATTAGTATAACTAGAGCCAAGTGTttgtcctggtcaggtcacaaaactcctggccctaagtACAGTATAATACCGCAGTATGTGGCAGACCTAGCAAGCTGGGATGATTGAACTTGTAAACCCCTCCTTTTCCCCACACTGTCTAGCCTACTAATCTAACCTACAGCTTCCAGCCAGAATACAGGACACCGTTTCTCCAGCATTAGGTCTCACCGTGGCCTGATTGTGAGGTTGTCTATATGGCCAAGTATGATTGACTGCGAGGCTCACTATCTGGCAATAGGCATGGTTGTGATTGATTGTGTAAGAGTAAACATCTACAGCAAGCATGACTGGGCTGGGTCACTATCTGGCAGCACACCTGTAGAGTGAGTGGACATGGCTAATGGCTAGGTCATTGTGTGGAGCTAAAACAAAGTAAAGTCCCCAGAGTCACATAGATATGACAGGTCATTACTTACTGAATGTCAGGTTATGCTGTAGAACATTGTTGAATTGGCAAAGTAAACACTGATTTTCCTATGGCTCGCAaatgtgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtggccATTCATCTATCACAGGCCTGTCTGCTCTCTGGCTGGTGAGCTGAGGTCTGATTCAGCTCACACCAAGCCAGGGTCTCTGTGGTCACACAAAGAACAGATGTATACCTCTCTAGCCTTGACTGTGCCCTGCAGGGTTCAGCGACAGTACACACTGTTAAATACACTTGGTAGGGAGGCagtgagagaagaaaggagaggcaaggagaggagaggtgagcagaggagagatgaggacaggtgaggaaaggagag
>TU1973629
CTGTTTTTATTAAAGCCTCGACGGGCAATAATACTGAAAAAAGTGAACTCAGAACAGATGGTGCACGGCGAGCCCACGGcctctctttttttgttgtttcctttgtttatttgtcatttttcttcttttttttttgtaagagTACATCAACTCCTGCTTTTATTGTAGCATGAATAACATCAATAAAAGAGAAAAAGAAATATACAACTTATATTACACTGTGTTATGAACAAAATATAAATCTATAACTCTATGTTATATGTACATAATTATCTTTCTCCATTTTGTCAAGTTCAGATGGTCAGATACGTGTTTCTTTTTTGGACTAACTCGGACTTTGTTTTGAGCTCCACTCGTGACATTTGATTGTCTTCAttgttattatcatcatcatcttcatcgcGATCATGGTCACCATCGTCGCTGTATCACCCAACATCACCAGGGCCTATCATCCTGTCAACCTGCTCATGAAAAACGTTGGACTCTATTCATTAGTATAACTAGAGCCAAGTGTttgtcctggtcaggtcacaaaactcctggccctaagtACAGTATAATACCGCAGTATGTGGCAGACCTAGCAAGCTGGGATGATTGAACTTGTAAACCCCTCCTTTTCCCCACACTGTCTAGCCTACTAATCTAACCTACAGCTTCCAGCCAGAATACAGGACACCGTTTCTCCAGCATTAGGTCTCACCGTGGCCTGATTGTGAGGTTGTCTATATGGCCAAGTATGATTGACTGCGAGGCTCACTATCTGGCAATAGGCATGGTTGTGATTGATTGTGTAAGAGTAAACATCTACAGCAAGCATGACTGGGCTGGGTCACTATCTGGCAGCACACCTGTAGAGTGAGTGGACATGGCTAATGGCTAGGTCATTGTGTGGAGCTAAAACAAAGTAAAGTCCCCAGAGTCACATAGATATGACAGGTCATTACTTACTGAATGTCAGGTTATGCTGTAGAACATTGTTGAATTGGCAAAGTAAACACTGATTTTCCTATGGCTCGCAaatgtgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1973628 False 1369 lncRNA 0.44 2 28002267 28023525
TU1973629 True 1073 lncRNA 0.41 2 28002267 28011387

Neighbor

gene id symbol gene type direction distance location
LOC110500182 LOC106609326 coding upstream 47830 27937819 ~ 27954437 (+)
LOC110500181 LOC106609325 coding upstream 79089 27905081 ~ 27923178 (+)
LOC110500180 LOC106609324 coding upstream 99370 27890465 ~ 27902897 (+)
LOC110500177 LOC106576158 coding upstream 316307 27656376 ~ 27685960 (+)
LOC110500167 NA coding upstream 690658 27309199 ~ 27311609 (+)
LOC118942914 NA coding downstream 231100 28254592 ~ 28257603 (+)
LOC110501048 LOC106609163 coding downstream 287493 28311018 ~ 28335924 (+)
LOC110500183 LOC106609180 coding downstream 317898 28341423 ~ 28343734 (+)
utp20 utp20 coding downstream 328426 28351951 ~ 28376045 (+)
LOC110500185 LOC106609173 coding downstream 356297 28379822 ~ 28390596 (+)
G1722671 NA non-coding upstream 180704 27820446 ~ 27821563 (+)
G1722654 LOC106609323 non-coding upstream 234827 27763030 ~ 27767440 (+)
G1722630 NA non-coding upstream 272208 27729805 ~ 27730059 (+)
G1722607 NA non-coding upstream 283234 27715429 ~ 27719033 (+)
G1722626 NA non-coding upstream 289633 27712393 ~ 27712634 (+)
G1722784 NA non-coding downstream 58745 28082270 ~ 28082564 (+)
G1722799 NA non-coding downstream 95490 28119015 ~ 28119380 (+)
G1722834 NA non-coding downstream 163735 28187260 ~ 28187624 (+)
G1722842 NA non-coding downstream 176981 28200506 ~ 28200736 (+)
G1722851 NA non-coding downstream 201935 28225460 ~ 28225680 (+)
G1722079 NA other upstream 1180332 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 1671174 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 1960424 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2365678 25636335 ~ 25636589 (+)
G1720836 NA other upstream 2389999 25611816 ~ 25612268 (+)
G1724234 LOC106609199 other downstream 1189294 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 1234735 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1866761 29890286 ~ 29891957 (+)

Expression


Co-expression Network