G1723600


Basic Information

Item Value
gene id G1723600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28340183 ~ 28345660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1974561
TGGTGAACTCCGATTTTTATTTTAtgaacaacaaatcaatacaggaaGTACATGTGGGAACacaagtgtatatataaataatatacaaagGACAATTGGGCTAGGGGGTACAACatcacattacacaaggaccttaagggacatacacTTATTATTccaacagcttttttgttagagtatttaattgtcttaaaatacagttgaaTTTATTTTTGTAAGTTAAGAAaatgtggtgttttgtttgtaaatttacatttgtgaatatgaaataTGGCCTaaagaataatgaaatgaatTACAAAAATGGTTTCAGCTTATTTGTATCGtaggtaaagaatccaagcagtacatctcttCACAATAGTGTAAaccttcataaatgtgttcaattataaatctactgatgtcttgccacagttatCTTGCATGAATACAATGCCGAAAAgtatgcaacactgtttctgggtggtcattacaaaaggggTCATTTGAgttgttttccttaaaCCAAATTCAACTTCATACCCCCTGGAAAGAGACACATtttagtgtttaaaaaaaaacatgttaattAGACACAACATGTAATATGGTAAGAAGCAACACTACCATTTGGGGAAGAGTACCTGAAAGTAGACTGACCACCAGTCCAACAGCCAGTGTTGTAAGTGTCCCAATAGGACTGAAGTAGAGATAGGACAGGGAGTACCAGTTATCAGCCAGGAAGGGTCTGCAGAGGAGACAAACATAGTGGCATCCAACAGTTATAACGTTGCATATATTGTTTAACGCTCATGCAGTTTGCTATTCTAACATGACAAAATGATTCCCGTTCGACAGTACATTTCTAACTGAATATTTGTTTTAACTGTGCCCATGTCAATATACTTG
>TU1974562
TGGTGAACTCCGATTTTTATTTTAtgaacaacaaatcaatacaggaaGTACATGTGGGAACacaagtgtatatataaataatatacaaagGACAATTGGGCTAGGGGGTACAACatcacattacacaaggaccttaagggacatacacTTATTATTccaacagcttttttgttagagtatttaattgtcttaaaatacagttgaaTTTATTTTTGTAAGTTAAGAAaatgtggtgttttgtttgtaaatttacatttgtgaatatgaaataTGGCCTaaagaataatgaaatgaatTACAAAAATGGTTTCAGCTTATTTGTATCGtaggtaaagaatccaagcagtacatctcttCACAATAGTGTAAaccttcataaatgtgttcaattataaatctactgatgtcttgccacagttatCTTGCATGAATACAATGCCGAAAAgtatgcaacactgtttctgggtggtcattacaaaaggggTCATTTGAgttgttttccttaaacttcttcacatagtggttggcaggataatatttatgaataattttaaagataacttccttaattttgttaacaagtaggtatgtgtgtggcaacatccaaacttttttcccaaccgatattatcaataaatccgttccaataaggcatgacataaagCAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1974561 False 891 lncRNA 0.35 3 28340183 28345660
TU1974562 True 668 lncRNA 0.32 2 28340183 28340927

Neighbor

gene id symbol gene type direction distance location
LOC110501048 LOC106609163 coding upstream 4259 28311018 ~ 28335924 (+)
LOC118942914 NA coding upstream 82580 28254592 ~ 28257603 (+)
LOC110500182 LOC106609326 coding upstream 385746 27937819 ~ 27954437 (+)
LOC110500181 LOC106609325 coding upstream 417005 27905081 ~ 27923178 (+)
LOC110500180 LOC106609324 coding upstream 437286 27890465 ~ 27902897 (+)
utp20 utp20 coding downstream 6291 28351951 ~ 28376045 (+)
LOC110500185 LOC106609173 coding downstream 34162 28379822 ~ 28390596 (+)
LOC110500191 LOC106609184 coding downstream 279102 28624762 ~ 28787436 (+)
aebp2 LOC106609187 coding downstream 443272 28788932 ~ 28807707 (+)
LOC118943023 NA coding downstream 462160 28807820 ~ 28807949 (+)
G1723568 NA non-coding upstream 63509 28276312 ~ 28276674 (+)
G1723566 NA non-coding upstream 65549 28274371 ~ 28274634 (+)
G1723558 NA non-coding upstream 73191 28266593 ~ 28266992 (+)
G1722863 NA non-coding upstream 96686 28243290 ~ 28243497 (+)
G1723608 NA non-coding downstream 58292 28403952 ~ 28406128 (+)
G1723764 NA non-coding downstream 134380 28480040 ~ 28480313 (+)
G1723765 NA non-coding downstream 134961 28480621 ~ 28484397 (+)
G1723790 NA non-coding downstream 175101 28520761 ~ 28521050 (+)
G1723791 NA non-coding downstream 175413 28521073 ~ 28521505 (+)
G1722079 NA other upstream 1518248 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2009090 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 2298340 26038302 ~ 26041843 (+)
G1720853 NA other upstream 2703594 25636335 ~ 25636589 (+)
G1724234 LOC106609199 other downstream 867159 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 912600 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1544626 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 2236342 30582002 ~ 30590636 (+)
G1726222 NA other downstream 2259640 30605300 ~ 30611361 (+)

Expression


Co-expression Network