G1724040


Basic Information

Item Value
gene id G1724040
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 28824411 ~ 28827966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1975082
tctctttctttctctctctctttctctctctctttctctctctctttctctctctttctttctctctctttctttctctctttctctctttctctctctctttctttctctctctctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctctttctctctctttctttctctctctttctttctctctctctctctttctttctctctctttctttctctctctctctttctctctctctctctttctctctctttctctctctctctttctctctctctctttctctctctttctctctctttctctctctttctttctctctctctctttctctctctctctttctctctctttctctctctctctttctctctctttctttctctctctttctctctctttctct
>TU1975083
tctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctctttctctctctttctttctctctctttctttctctctctctctctttctttctctctctttctttctctctctctctttctctctctctctctttctctctctttctctctctctctttctctctctctctttctctctctttctctctctttctctctctttctttctctctctctctttctctctctctctttctctctctttctctctctctctttctctctctttctttctctctctttctctctctttctct
>TU1975084
tctctttctttctctctctctttctctctctctttctctctctctttctctctctttctttctctctctttctttctctctttctctctttctctctctctttctttctctctctctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctcttt
>TU1975087
tctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctctttctctctttctttctctctttctctctctctttctttctctctctctttctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctcttt
>TU1975080
ctctctctctctctttctctctctctctttctctctctttctttctctctttctctctttctctctctctttctttctctctctctctttctttctctctctctttctctctctctttctctctctctttctctctctctttctctctctttctctctttctttctctctttctctctctttctttctctctctttctttctctctctctctctttctttctctctctttctttctctctctctctttctctctctctctctttctctctctttctctctctctctttctctctctctctttctctctctttctctctctttctctctctttctttctctctctctctttctctctctctctttctctctctttctctctctctctttctctctctttctttctctctctttctctctctttctct
>TU1975081
ctctctctctctctttctctctctctctttctctctctttctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctctctctttctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctttctctctctctctctctctttctctctttctctctctctctctttctttctc
>TU1975085
ctctctctctctctttctctctctctctttctctctctttctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctctctctttctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctctctttctctctctctctctctttc
>TU1975086
tctctctttctttctctctctctctttctttctctctctctctttctctctctttctctctctttctttctctctctttctctctctttctctctctttctctctctttctctctctttctctctctttctctctctttctctctctctctctctctctctctctctctctctttctctctctttctctctctttctttctctctctttctttctctctctctctttctctctctctctctttctctctctttctctctctctctttctctctctctctttctctctctttctctctctttctctctctttctttctctctctctctttctctctctctctttctctctctttctctctctctctttctctctctttctttctctctctttctctctctttctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1975082 False 457 lncRNA 0.39 4 28824411 28827775
TU1975083 False 367 lncRNA 0.40 2 28824411 28827775
TU1975084 False 203 lncRNA 0.38 3 28824411 28825659
TU1975087 False 277 lncRNA 0.39 3 28824411 28825659
TU1975080 False 426 lncRNA 0.40 3 28824986 28827775
TU1975081 False 277 lncRNA 0.43 3 28824986 28827966
TU1975085 False 245 lncRNA 0.43 2 28824986 28826286
TU1975086 True 405 lncRNA 0.40 2 28827001 28827775

Neighbor

gene id symbol gene type direction distance location
LOC118943023 NA coding upstream 16462 28807820 ~ 28807949 (+)
aebp2 LOC106609187 coding upstream 16704 28788932 ~ 28807707 (+)
LOC110500191 LOC106609184 coding upstream 36975 28624762 ~ 28787436 (+)
LOC110500185 LOC106609173 coding upstream 433815 28379822 ~ 28390596 (+)
utp20 utp20 coding upstream 448366 28351951 ~ 28376045 (+)
LOC110501052 LOC106609188 coding downstream 36043 28864009 ~ 28940590 (+)
LOC118942915 NA coding downstream 113228 28941181 ~ 28943195 (+)
LOC110501054 LOC106609189 coding downstream 149416 28977382 ~ 29040907 (+)
cog5 LOC106609192 coding downstream 252338 29080304 ~ 29168271 (+)
LOC110500199 LOC106609197 coding downstream 345633 29173599 ~ 29183951 (+)
G1723926 NA non-coding upstream 216609 28607554 ~ 28607802 (+)
G1723905 NA non-coding upstream 231843 28592369 ~ 28592568 (+)
G1723838 NA non-coding upstream 279480 28544612 ~ 28544931 (+)
G1723791 NA non-coding upstream 302906 28521073 ~ 28521505 (+)
G1723790 NA non-coding upstream 303361 28520761 ~ 28521050 (+)
G1724086 NA non-coding downstream 65560 28893526 ~ 28893742 (+)
G1724096 NA non-coding downstream 81492 28909458 ~ 28909757 (+)
G1724097 NA non-coding downstream 81808 28909774 ~ 28909986 (+)
G1724099 NA non-coding downstream 86095 28914061 ~ 28914279 (+)
LOC110500183 LOC106609180 other upstream 480677 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 499794 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2002476 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2493318 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 2782568 26038302 ~ 26041843 (+)
G1724234 LOC106609199 other downstream 384853 29209169 ~ 29214283 (+)
G1724262 LOC106609200 other downstream 430294 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 1062320 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1754036 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1777334 30605300 ~ 30611361 (+)

Expression


Co-expression Network