G1724234 (LOC106609199)


Basic Information

Item Value
gene id G1724234
gene name LOC106609199
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29209169 ~ 29214283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1975301
caagttcaagAAAATCTCAGCGAGAGACTCAAAAGGCGAAATTCAATAACGATAGGATTCATTGCCCTTGGCAATCAACCTCTTCTCTGTTGTGGacgatgttggctttcgccgactggtcgagcacctcgagccccggtacacactaccaagtaggcgctatttttcagatgtagccctaccggagttacacagaaACGTTGAAAACGCACATCCACGACCTACTTGCTAAGGGCGTCACTGATATTAACTTCacaactgacatttggaccagcgacgtcagccccatgagcatgttgagtctgacagcacagtgggtcgacgaggatttcgtactgaggaaaggacagacagagctgaaacttcactgctcgACATGTAcaatgaaatcctggttgagaatgaaacgactgaacaacaaaacagcacagcaagtaagtgaaataaatgGGTTTTGATTATGTTTCACTGGTAATGTGAACAAATGCGTAAATGTcaacaaaataacattttggtCAGTGTGTGCATTTCAACTATTTTAGTGTACTGGAATGCTTAAGAGGCTGATAAAACTTTAACTATCCGTTATCGGGATCGGGTTTCTTGGCAAGGGCAGTATTGGATATCGGTCAAAAATGGCATCTGTGCATCCCTAGGTAAAACCTCACTGGGATAAAACATTACTCAGTTAGAACCACATTATGTCAGAGCTGGCGGTCTCATGTTCTGAGATAAACTGTTCTGATGTTGGCACCCCTGTTGTAAAACAGCccctgcatcaccacctggtggcTGAGGGGACCTGTGCCAGGTTGGCACTGTTCGTTGGCCAACCGGTGGAGTGGATTGAAGGCTGTGAGATTATATTCCCACAGAACTAGATTACACAGGTTTATATCATATCTACTTTAAACCACTACTCTAGCTCTCTGGGCAGAGACACAAACAGCTTAGTAAGTTTGTTTACCTCTATGTAATTCAGGTTGTCTTCTTTATGTAATGAATTGCagctgtaaataaataaaatcttgCAGGGTTCTTTCGTGTTTCTGTCGAAACATGTTAAAacatcctctctcatctctcgctCTCCACTTAAATCCTTGAAAGTATTAAAGCTCAGAAATGCAAAATCATTGAAATCTTATTTTTAGAAATTTCAACAAATCCTCCGGTTCCCGTCTGCTCTGTTCGATGTGCATGTAGAACACCACGCAATAATTACTTATCCTTTTTTTGGAAATGAATGGATGGATTATGCAGAAACAGGTTTATAATGTGAAATCTCCTTGTGTAACACTGGGCTGGCAGTGACTTCTGCAGtgggcagagatggagagatgcgTCATAATATTTCATATTTAGTTCTGAGGAGAATCATGTCTGATGAACACTACCTCAGAAATAAACAAGTTCTGAGCCTGAGGACTGGTAAGGGGGATGAAAACGCAACAACCCCCACCCACTcgccttccttccctcccctctttctcccagtAATACACATCCTCAGAGAGAAACCATCCCACTGTCCAGGCCTATTGGTTTGAGTTagaaagaaaggcatttcactgtccttgttcatgtgacattaaaacatcCCATACGTTATACGACAGAGGCTAGGTAGACCGCCGCGTGAGAAGAGTCAGATCACAGGTCAGATAGGATCTTCCCATACCATTAGAAGTAGGGGATGAGTCTACTAGCCAGAGGCTACAGTACAGACAACAATATCTCTTCCTCAGTCagaacccagtcagtcagtcatactcACATCGAAGCCTGTGTTGGGGTCCCAGCCGACATGGCCAACGTGCTGGAAGTTGCTGGGCGTTCCGATGTCCGCCTTGGTCAGCTTCTTGCCCTTCTTTCCCTtcaccttcttctccttcttgttgttgttgttgacgctGCTGCTCACCATGTTGAGCTGAGAGTTGTGGCCGTGGAACCGTGACATACTGCTGATCTCTGGATTCTTGATGTCCACCGTGGCCATGGGCAGGGCAGGGCCTCTGTGGCTGGAGTCCCCACGGGGGCTCTTTCTGATTGAGGGTGAGACTGAGGGACTACAGTCACAGTGAGTTCCGTCCCCCTTCCTCCACCCTCTGTCCCCCTTACACTCTCCGGCCGCTGCCATGTTGACGTCCAGCAGCATCTTACCCACCACGCCACAAGCGTGGTCCCCGTGGCGTAGCGAGAGGCGGGTAGCGAGGTCCGAGGGGGGCGCATATAGTTCCTCCTGGGGAAGGATCAGGCAGTGGAGGGTGGAGAGACACCCTCCCGGAAGCAtcgcccctcctcctcccccctcagatAGGTCCTCAGAGGGAGAGGACAAGAAGGTGGTACAGAACATCATCTCAGAGCAATGGCAgaagcatggggggggggggtggcaagACTACGTGGTGCTTAGTCCTGGGCTATAGCTCAGAGAGCCACTGATCCAAAGATCTACAGAATCAGAGAGACATCCCGAGCTATAGAACTAGAGAACCAACTCCAGGCGTTTccaaaaacagatccagagaaccAGGTGGAGGAGCAACCAGAGAGAACAGGCAGAGCCAG
>TU1975302
ATGGACTCAACCCACACTGAGGGCTTGTGAAAGACCCTTACTTCTCAGATGTCACAAATAAGAGCGGAATTAAAAACACACAActaaaacagaatagaacagaacggAAAGGAATACATTGGAAAGAATACTTACTGGAAGTTGCTGGGCGTTCCGATGTCCGCCTTGGTCAGCTTCTTGCCCTTCTTTCCCTtcaccttcttctccttcttgttgttgttgttgacgctGCTGCTCACCATGTTGAGCTGAGAGTTGTGGCCGTGGAACCGTGACATACTGCTGATCTCTGGATTCTTGATGTCCACCGTGGCCATGGGCAGGGCAGGGCCTCTGTGGCTGGAGTCCCCACGGGGGCTCTTTCTGATTGAGGGTGAGACTGAGGGACTACAGTCACAGTGAGTTCCGTCCCCCTTCCTCCACCCTCTGTCCCCCTTACACTCTCCGGCCGCTGCCATGTTGACGTCCAGCAGCATCTTACCCACCACGCCACAAGCGTGGTCCCCGTGGCGTAGCGAGAGGCGGGTAGCGAGGTCCGAGGGGGGCGCATATAGTTCCTCCTGGGGAAGGATCAGGCAGTGGAGGGTGGAGAGACACCCTCCCGGAAGCAtcgcccctcctcctcccccctcagatAGGTCCTCAGAGGGAGAGGACAAGAAGGTGGTACAGAACATCATCTCAGAGCAATGGCAgaagcatggggggggggggtggcaagACTACGTGGTGCTTAGTCCTGGGCTATAGCTCAGAGAGCCACTGATCCAAAGATCTACAGAATCAGAGAGACATCCCGAGCTATAGAACTAGAGAACCAACTCCAGGCGTTTccaaaaacagatccagagaaccAGGTGGAGGAGCAACCAGAGAGAACAGGCAGAGCCAG

Function

NR:

description
neural Wiskott-Aldrich syndrome protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1975301 False 2577 lncRNA 0.48 3 29209169 29214283
TU1975302 True 892 TUCP 0.55 2 29212819 29214283

Neighbor

gene id symbol gene type direction distance location
LOC110500200 LOC106609198 coding upstream 14373 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 25218 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 40898 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 168262 28977382 ~ 29040907 (+)
LOC118942915 NA coding upstream 265974 28941181 ~ 28943195 (+)
LOC110501056 LOC106576126 coding downstream 33634 29247917 ~ 29251909 (+)
LOC118942782 NA coding downstream 409999 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 766601 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 779162 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 788121 30002404 ~ 30009586 (+)
G1724231 LOC106609199 non-coding upstream 1982 29206862 ~ 29207187 (+)
G1724229 NA non-coding upstream 8356 29200571 ~ 29200813 (+)
G1724227 NA non-coding upstream 9726 29199053 ~ 29199443 (+)
G1724222 NA non-coding upstream 22221 29186712 ~ 29186948 (+)
G1724180 NA non-coding upstream 122849 29086006 ~ 29086320 (+)
G1724246 NA non-coding downstream 17448 29231731 ~ 29232065 (+)
G1724252 NA non-coding downstream 30939 29245222 ~ 29245504 (+)
G1724255 NA non-coding downstream 32567 29246850 ~ 29247065 (+)
G1724260 NA non-coding downstream 38208 29252491 ~ 29252829 (+)
LOC110500183 LOC106609180 other upstream 865435 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 884552 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2387234 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2878076 26324744 ~ 26333964 (+)
G1721084 pfkfb3 other upstream 3167326 26038302 ~ 26041843 (+)
G1724262 LOC106609200 other downstream 43977 29256778 ~ 29259929 (+)
G1725312 LOC106576088 other downstream 676003 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1367719 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1391017 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 1667560 30881776 ~ 30889293 (+)

Expression


Co-expression Network