G1724261


Basic Information

Item Value
gene id G1724261
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29253339 ~ 29254834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1975329
TGGAGATTTAATGTAGTTATAAGTAATGTACAGTATGCAGGCTACACAATATCCATACAGTGATTGATTCAATTCAATTCCACCATGGACATACTGTAGCAAGAATATTTGAGTCTTTCCTCATTTATAACCTAAAATAAACATGATTTTACTTACTCATTGTGAGCTATATAGTACATGATTGTTCTGTATTATTAAATACAGTTGGTCAATGATTTCCAAACATCAATTTTTAAAAGAAAAATGATGATTAAGATCACAACTTTACCAGGGACAGAAGGTTCTCCCcaaccacatacagtgccttgtgaaagtattcaccccctaggcatttttccttttctgttgccttacaacctggaatcgaTTTTTGGAgaggttgtatcatttgatttatacaacatgcctactactttgaagatgcaaaatattttttattgtgaaacagacaagaaataagacaaaaaaacggaaaacttgagcgtgcataactattcaccccccagaGTCAATATTTGGTAGAGgcaccatttgcagcaattacagctgcaagtctcttggggtatgtctctataagcgtGGCACATTTAgcaactgggatttttgcccgttcttcaaggcaaaactgctccagcaccttcaagttggatgggttccgctggtgtacagcaatctttaagtcataccacaaatttctcaattggattgaggtctgggctttgactaggccattccaatacatttaaatgtttccccttaaacaacttgagtgttgctttagcattatgcttagggtcgttgtcctgctggaaggtgaacctctgccccagtctcaaatctctggaagactgaaacaggtatcAAGaatcaagaatttccctgtatttagcgccatccatcattccttcaattctgaccagtttcccagtccctgccgatgaaaaacacccccacagcatgatgctgtgtcTCCCACCATGCTGTGTCTcccgccttttggcaaacaccaaacgtgtttgcttatttttttcttcaagcaatggcattttttctggccactcttccgtaaagcccagctctgtgaagtgtacggcttaaagtgatcctatggacagatacttcaatctccactgtggagctttgctgctccttcagggttatctttgatctctttgttgcctctctgattaatgcccttcttGTCTGATCTGTGAgctttggtgggcagccctctcttggcaggtttgttgtggtgccatattctttccattttattAATAATATATTTAATAGTGCTCcctgggatgttcaaagtttcagatatttattTAAAACCCaacactgatctgtacttctccacaacattttccctgacctgtttggacagctccttggtcttcatggtgccgcttgcttggtggtgttgcagactctggggcctttcagaacaggtgtatacagtgccttgcgaaagtattcggcccccttgaactttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1975329 True 1496 lncRNA 0.41 1 29253339 29254834

Neighbor

gene id symbol gene type direction distance location
LOC110501056 LOC106576126 coding upstream 1430 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 58543 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 69388 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 85068 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 212432 28977382 ~ 29040907 (+)
LOC118942782 NA coding downstream 369448 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 726050 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 738611 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 747570 30002404 ~ 30009586 (+)
cin cin coding downstream 818613 30073447 ~ 30075203 (+)
G1724260 NA non-coding upstream 510 29252491 ~ 29252829 (+)
G1724255 NA non-coding upstream 6274 29246850 ~ 29247065 (+)
G1724252 NA non-coding upstream 7835 29245222 ~ 29245504 (+)
G1724246 NA non-coding upstream 21274 29231731 ~ 29232065 (+)
G1724262 LOC106609200 non-coding downstream 1944 29256778 ~ 29259929 (+)
G1724841 NA non-coding downstream 152826 29407660 ~ 29407860 (+)
G1724851 NA non-coding downstream 160237 29415071 ~ 29415398 (+)
G1724901 NA non-coding downstream 187002 29441836 ~ 29442042 (+)
G1724904 NA non-coding downstream 189704 29444538 ~ 29444754 (+)
G1724234 LOC106609199 other upstream 39056 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 909605 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 928722 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2431404 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2922246 26324744 ~ 26333964 (+)
G1725312 LOC106576088 other downstream 635452 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1327168 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1350466 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 1627009 30881776 ~ 30889293 (+)

Expression


Co-expression Network