G1724262 (LOC106609200)


Basic Information

Item Value
gene id G1724262
gene name LOC106609200
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29256778 ~ 29259929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1975330
TATTCATCATCACTGAGGCAGTAACTGTTGGCCCATGTGTATCCTTCTTTTGCATCGTCCACAACAAAAGCCCACCATTTTGAAATTACAAACCACAAGGAAAATAATCTTGTTATTTCAATCAGTCCAGTGTCAGTCTCCAGAAGAGTGGAAGGTATTGTTTGTTTGCGGAGGCAAGGGAAACTCTCACGGCATGACATATTCATAATCATCTGACAAAAATCAACATGTGTAAAAGTTGAAATATTTCAATAACATCATGTTATAAGATATTTTTCCCTGCACTAGTATTACTCATCAGTACCAGCTTTCAGTTACCTCCAACCTTAGTTTTACGGAATCCCCAGGACTGACGACAGCAGCCAGTAAAATGCGTTAAAAACATGCTAGAGAATCATAAAATCAGTAGAGCTAAAACTATACGTTTCCAAACGGAGAGAGTATAAAACGGAAAGAGTATAATGTTGGAACAGGATGCTAGTGAAGTCACAGTGCCAGGtattcacacatactgtatgtgtttggtCCCTCAGAGAGAACATGAGACTTTACCGTGTGGTACAAGTGCAAACAAGGAAATAAAACAGGCAGAAAGATCAATGCCAAAGGACAAAGGATTGATCCCAAGTACTTATACTATACATGCTCCACACCTGGCTCccagacctggattcaaatactattttcaaatcatttcaaataccttTTTTTTTGCTAGGCTTGCTTGAGCTTTCCTGGTGTGGAACCAATTCAATAGTCACAAACATTCAAACCCCAAAACCCATctatctggcactccaggcaggtgAAAACAAACAGTGAAAGTGCTTGAAAGATTTCaagtagtatttgaacccaggtctgctgacTCCTGATATTGCCCAATCCAGATGAACCTGTCGAGTGTAAACCATAAAACGCTGACGCGTTCGCCGCTGCTTTATAAAAGTTAGGTAAAcaagcctggggctggagattccCCGTTGAGCTTTGTTTTTTTTAGTTCAGCCAGGATTAGGGGGAACCTTGGCCCACAGTGTAGTTCATGTTTGGGAGATGTCCCTATGTAAAGAAGGGAGAAGGTTACATCTGATCCTCAGGGTCTGTCTGACTGGCACACATTGTCTGTTTACATGACCCAGATTAAGCCTATAGTTGTagactaaaaagcactttcaattCCCCATTGAGCTTCCTTTTTTAGGTCAGCCACGACTAGGGGGAAACTGGCCCACAGTGTAGTTCAGTTTGTCTGTAGTCCAGCTGTCTGTAGGTTTGCTCAGAAAGGCACTCCAACACAGTAAGGTTAAGGTTTGGTTCAGAAAACTATTCACAGTGAAATTAATTCGGTCCACGACCCGTTCGTTCTATCTCCTGCTACATACATTTTGAACTTTTTTAGAACCCATTTTATTTCCAAATGTCatgcttttttttttaagaaaataagATTTAAGCAATTAAGTGATCATGAATGTCCATATGCAGCCATGCAGAAATTAGCTCAAAGCATGCTCTGGGATTGAAGAGACCAAACAAGTCAAATGGTGCCTGCCATGCATATGGCTGATTTCGTCAATATAGTTTAAATAATTCACAGCTCTAAAATCATGAGCAAGCAAATGAAgtgtaaaatgtaaaatattattGTTTCATCTGCATCAAAGTAAGAAATAGCAGTTGTCATCACAGCAGAAGGCATGTCTATGTGTCATCACATGGCAGGCAAGGCATGCCTGTGTGTTTAGGCTACCTGTAACAAATTGATAGGCTATTCGGTAGAATCACTGATAAAAAGAGGCTGTCTAAACAGCTACATCAATACCACATTTCCACTGGGgaaatacattattttttacaAAGTGCGGGTACACAATTGATCAGCTTAAATGTCATCTTCTTTATTTGTATTAGTATCAATAGTCCCTAAATCAATTGTGGCCTAGGCCTATAATACAGTTGTCTTTCCTGGACACAGGACAGACGTTGATGCCAGCGCCCTGCCCTGAGTGCCCTCACTCCTCGTCTTTGGCACACACCACCACGCGCAGCAGAACGTTGGACAGAATATCCTGGTAGAGACTGATGCAGACCCATCCGGGCAGGTAGAGGAGCGTGATCAGGCCCATGAAGTTGAATGGATAGTGGGAATAATCCCATGAGCATGCGCCGTACTGCCGCAGCGCCAGCCCCCAACAGAACTCCCAGGTGTAGATGAAGCAGATATAGATGGGGAGCCGCCTCCAGGTGCTCCAACCCCGTCTGAAGCGTAAATGAAGGTAGAGTTTCTCTACCACGAAGCTGCAGCTCCCGTACATCAGGAAGGACCACAGGGACGTGTGGCCGCTCATGGTCCGGTCCAAATTCTCCACAAGGTTGAATATCGAGGTAAAAATTATCTCGTCCAGAAAGCCATGCATTCCAAAGAAGAGGAATCGCACAACATCGGGTAGACCGTTATTAGGCAGCGACTCCAGGGTGCGCTCTGCTGGGGTAGACATGGTCCGTTTCCCGGGGCAGTGGTAGCGCAGCCGCGCAAGCCCCTTGTGGAAAACTTGGGTGAAGTACAGGGCCAGTAGGTAGTGAACTACGAGATGAGTGGCAGAGACTATTCTAACGTGCTCGGTCAGCGTGTTAATATTCCCAATCAGGATCTGCAACCCGATGTACACAGAGGGATAGAAAACAAGGTGAAAAACTACTGGGCGTCCTTGAAAGCACTTCTTTTGCGAATATATTTTTTCCAGCAAGAAATGGGTCACCGAGTGCATGATGCAGAGGTACGGGGAGGAAAAGCCGAACAGTTTGGGGTCGCTGTCAGCCAAAAGCCCCTGTGCCGACGACAGGAGAATATCCAAAGTGACACCGTGCATTCCATAGAAATAAAGCCGTAACAATTGTGGCAGCTCTGTCATTGATTCGCCCGCGTCCCCTACCTCGCTGGATGGATCTTTCTGCCGGGGCTTCCTCGCTGCTCTCAGGCTGCTACCTCCCTGTCCTGCCCGGATCCGCGGGCTCTCTCTCCGCCAGCTGGCCATGGTTGAGCTCTCTCTCCTCGGAGAGAATCAGAAAGCAGCTCTTGTTCTTC
>TU1975334
ATGCAGCCATGCAGAAATTAGCTCAAAGCATGCTCTGGGATTGAAGAGACCAAACAAGTCAAATGGTGCCTGCCATGCATATGGCTGATTTCGTCAATATAGTTTAAATAATTCACAGCTCTAAAATCATGAGCAAGCAAATGAAgtgtaaaatgtaaaatattattGTTTCATCTGCATCAAAGTAAGAAATAGCAGTTGTCATCACAGCAGAAGGCATGTCTATGTGTCATCACATGGCAGGCAAGGCATGCCTGTGTGTTTAGGCTACCTGTAACAAATTGATAGGCTATTCGGTAGAATCACTGATAAAAAGAGGCTGTCTAAACAGCTACATCAATACCACATTTCCACTGGGgaaatacattattttttacaAAGTGCGGGTACACAATTGATCAGCTTAAATGTCATCTTCTTTATTTGTATTAGTATCAATAGTCCCTAAATCAATTGTGGCCTAGGCCTATAATACAGTTGTCTTTCCTGGACACAGGACAGACGTTGATGCCAGCGCCCTGCCCTGAGTGCCCTCACTCCTCGTCTTTGGCACACACCACCACGCGCAGCAGAACGTTGGACAGAATATCCTGGTAGAGACTGATGCAGACCCATCCGGGCAGGTAGAGGAGCGTGATCAGGCCCATGAAGTTGAATGGATAGTGGGAATAATCCCATGAGCATGCGCCGTACTGCCGCAGCGCCAGCCCCCAACAGAACTCCCAGGTGTAGATGAAGCAGATATAGATGGGGAGCCGCCTCCAGGTGCTCCAACCCCGTCTGAAGCGTAAATGAAGGTAGAGTTTCTCTACCACGAAGCTGCAGCTCCCGTACATCAGGAAGGACCACAGGGACGTGTGGCCGCTCATGGTCCGGTCCAAATTCTCCACAAGGTTGAATATCGAGGTAAAAATTATCTCGTCCAGAAAGCCATGCATTCCAAAGAAGAGGAATCGCACAACATCGGGTAGACCGTTATTAGGCAGCGACTCCAGGGTGCGCTCTGCTGGGGTAGACATGGTCCGTTTCCCGGGGCAGTGGTAGCGCAGCCGCGCAAGCCCCTTGTGGAAAACTTGGGTGAAGTACAGGGCCAGTAGGTAGTGAACTACGAGATGAGTGGCAGAGACTATTCTAACGTGCTCGGTCAGCGTGTTAATATTCCCAATCAGGATCTGCAACCCGATGTACACAGAGGGATAGAAAACAAGGTGAAAAACTACTGGGCGTCCTTGAAAGCACTTCTTTTGCGAATATATTTTTTCCAGCAAGAAATGGGTCACCGAGTGCATGATGCAGAGGTACGGGGAGGAAAAGCCGAACAGTTTGGGGTCGCTGTCAGCCAAAAGCCCCTGTGCCGACGACAGGAGAATATCCAAAGTGACACCGTGCATTCCATAGAAATAAAGCCGTAACAATTGTGGCAGCTCTGTCATTGATTCGCCCGCGTCCCCTACCTCGCTGGATGGATCTTTCTGCCGGGGCTTCCTCGCTGCTCTCAGGCTGCTACCTCCCTGTCCTGCCCGGATCCGCGGGCTCTCTCTCCGCCAGCTGGCCATGGTTGAGCTCTCTCTCCTCGGAGAGAATCAGAAAGCAGCTCTTGTTCTTCGTTCGTGGCACATTCTGTACTTTTAACGGAGCTGCGGCAGTGTCATTAGCAGCTTTGCACCTGA
>TU1975332
GCTTAAATGTCATCTTCTTTATTTGTATTAGTATCAATAGTCCCTAAATCAATTGTGGCCTAGGCCTATAATACAGTTGTCTTTCCTGGACACAGGACAGACGTTGATGCCAGCGCCCTGCCCTGAGTGCCCTCACTCCTCGTCTTTGGCACACACCACCACGCGCAGCAGAACGTTGGACAGAATATCCTGGTAGAGACTGATGCAGACCCATCCGGGCAGGTAGAGGAGCGTGATCAGGCCCATGAAGTTGAATGGATAGTGGGAATAATCCCATGAGCATGCGCCGTACTGCCGCAGCGCCAGCCCCCAACAGAACTCCCAGGTGTAGATGAAGCAGATATAGATGGGGAGCCGCCTCCAGGTGCTCCAACCCCGTCTGAAGCGTAAATGAAGGTAGAGTTTCTCTACCACGAAGCTGCAGCTCCCGTACATCAGGAAGGACCACAGGGACGTGTGGCCGCTCATGGTCCGGTCCAAATTCTCCACAAGGTTGAATATCGAGGTAAAAATTATCTCGTCCAGAAAGCCATGCATTCCAAAGAAGAGGAATCGCACAACATCGGGTAGACCGTTATTAGGCAGCGACTCCAGGGTGCGCTCTGCTGGGGTAGACATGGTCCGTTTCCCGGGGCAGTGGTAGCGCAGCCGCGCAAGCCCCTTGTGGAAAACTTGGGTGAAGTACAGGGCCAGTAGGTAGTGAACTACGAGATGAGTGGCAGAGACTATTCTAACGTGCTCGGTCAGCGTGTTAATATTCCCAATCAGGATCTGCAACCCGATGTACACAGAGGGATAGAAAACAAGGTGAAAAACTACTGGGCGTCCTTGAAAGCACTTCTTTTGCGAATATATTTTTTCCAGCAAGAAATGGGTCACCGAGTGCATGATGCAGAGGTACGGGGAGGAAAAGCCGAACAGTTTGGGGTCGCTGTCAGCCAAAAGCCCCTGTGCCGACGACAGGAGAATATCCAAAGTGACACCGTGCATTCCATAGAAATAAAGCCGTAACAATTGTGGCAGCTCTGTCATTGATTCGCCCGCGTCCCCTACCTCGCTGGATGGATCTTTCTGCCGGGGCTTCCTCGCTGCTCTCAGGCTGCTACCTCCCTGTCCTGCCCGGATCCGCGGGCTCTCTCTCCGCCAGCTGGCCATGGTTGAGCTCTCTCTCCTCGGAGAGAATCAGAAAGCAGCTCTTGTTCTTC
>TU1975333
GCTTAAATGTCATCTTCTTTATTTGTATTAGTATCAATAGTCCCTAAATCAATTGTGGCCTAGGCCTATAATACAGTTGTCTTTCCTGGACACAGGACAGACGTTGATGCCAGCGCCCTGCCCTGAGTGCCCTCACTCCTCGTCTTTGGCACACACCACCACGCGCAGCAGAACGTTGGACAGAATATCCTGGTAGAGACTGATGCAGACCCATCCGGGCAGGTAGAGGAGCGTGATCAGGCCCATGAAGTTGAATGGATAGTGGGAATAATCCCATGAGCATGCGCCGTACTGCCGCAGCGCCAGCCCCCAACAGAACTCCCAGGTGTAGATGAAGCAGATATAGATGGGGAGCCGCCTCCAGGTGCTCCAACCCCGTCTGAAGCGTAAATGAAGGTAGAGTTTCTCTACCACGAAGCTGCAGCTCCCGTACATCAGGAAGGACCACAGGGACGTGTGGCCGCTCATGGTCCGGTCCAAATTCTCCACAAGGTTGAATATCGAGGTAAAAATTATCTCGTCCAGAAAGCCATGCATTCCAAAGAAGAGGAATCGCACAACATCGGGTAGACCGTTATTAGGCAGCGACTCCAGGGTGCGCTCTGCTGGGGTAGACATGGTCCGTTTCCCGGGGCAGTGGTAGCGCAGCCGCGCAAGCCCCTTGTGGAAAACTTGGGTGAAGTACAGGGCCAGTAGGTAGTGAACTACGAGATGAGTGGCAGAGACTATTCTAACGTGCTCGGTCAGCGTGTTAATATTCCCAATCAGGATCTGCAACCCGATGTACACAGAGGGATAGAAAACAAGGTGAAAAACTACTGGGCGTCCTTGAAAGCACTTCTTTTGCGAATATATTTTTTCCAGCAAGAAATGGGTCACCGAGTGCATGATGCAGAGGTACGGGGAGGAAAAGCCGAACAGTTTGGGGTCGCTGTCAGCCAAAAGCCCCTGTGCCGACGACAGGAGAATATCCAAAGTGACACCGTGCATTCCATAGAAATAAAGCCGTAACAATTGTGGCAGCTCTGTCATTGATTCGCCCGCGTCCCCTACCTCGCTGGATGGATCTTTCTGCCGGGGCTTCCTCGCTGCTCTCAGGCTGCTACCTCCCTGTCCTGCCCGGATCCGCGGGCTCTCTCTCCGCCAGCTGGCCATGGTTGAGCTCTCTCTCCTCGGAGAGAATCAGAAAGCAGCTCTTGTTCTTCGTTCGTGGCACATTCTGTACTTTTAACGGAGCTGCGGCAGTGTCATTAGCAGCTTTGCACCTGA

Function

NR:

description
transmembrane protein 229A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1975330 False 3088 lncRNA 0.45 1 29256778 29259865
TU1975334 False 1670 TUCP 0.49 1 29258260 29259929
TU1975332 False 1205 TUCP 0.53 1 29258661 29259865
TU1975333 True 1269 TUCP 0.53 1 29258661 29259929

Neighbor

gene id symbol gene type direction distance location
LOC110501056 LOC106576126 coding upstream 4869 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 61982 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 72827 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 88507 29080304 ~ 29168271 (+)
LOC110501054 LOC106609189 coding upstream 215871 28977382 ~ 29040907 (+)
LOC118942782 NA coding downstream 364417 29624282 ~ 29630010 (+)
LOC110500208 LOC106609208 coding downstream 721019 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 733580 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 742539 30002404 ~ 30009586 (+)
cin cin coding downstream 813582 30073447 ~ 30075203 (+)
G1724261 NA non-coding upstream 1944 29253339 ~ 29254834 (+)
G1724260 NA non-coding upstream 3949 29252491 ~ 29252829 (+)
G1724255 NA non-coding upstream 9713 29246850 ~ 29247065 (+)
G1724252 NA non-coding upstream 11274 29245222 ~ 29245504 (+)
G1724841 NA non-coding downstream 147795 29407660 ~ 29407860 (+)
G1724851 NA non-coding downstream 155206 29415071 ~ 29415398 (+)
G1724901 NA non-coding downstream 181971 29441836 ~ 29442042 (+)
G1724904 NA non-coding downstream 184673 29444538 ~ 29444754 (+)
G1724921 NA non-coding downstream 194593 29454458 ~ 29455192 (+)
G1724234 LOC106609199 other upstream 42495 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 913044 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 932161 28311018 ~ 28335924 (+)
G1722079 NA other upstream 2434843 26821647 ~ 26821935 (+)
cep83 LOC106609290 other upstream 2925685 26324744 ~ 26333964 (+)
G1725312 LOC106576088 other downstream 630421 29890286 ~ 29891957 (+)
G1726209 LOC106609221 other downstream 1322137 30582002 ~ 30590636 (+)
G1726222 NA other downstream 1345435 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 1621978 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1880732 31140597 ~ 31141090 (+)

Expression


Co-expression Network