G1725312 (LOC106576088)


Basic Information

Item Value
gene id G1725312
gene name LOC106576088
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29890286 ~ 29891957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1976442
TGGGCGGCGTGCTGACCGGTGGCGTGGCGTTCCGGTGGCTCCTCTTATGGGACTCCAGGTAGAGTTTCTTGGCGAAGGCCCGGCCGCACACGTCACACGAGTGGAGCGAGAAGTTCTTGGTGACACGCACCTctgtgctactgctgctgctctccTGGTGGGCGTCATGGCGACGTGTGTGGGGCGGCGTCGGGGCAGGGGTGTCGGGGTGTTGTTTGTCGTTCTTACGGGAGACAGATGACCCGGTTTGGGCCTCCTGctgcctctcctgtctctcctggttGCGAGTGaccggagtggaggaggagaggaggtcctGTTTGCGTGTGACTGGGTAGGAGGAGGAGTTGAGGAGCTCCTGTTTGCGTGTGACTGGGGGCGTAGGGGGAGAGGGGGCCGAGTGGCACCCGTTCACCTCCTCCTTGACTGTTGTTCCTCCtctcttgttgttgttggcatTGGGGGCAGAGTTGAGGACCACCTCAGCCGGCCGCTTGACCGCACGCGACTCCAGCTTGGGCACGATCTTGGCCAGGTAGCCCGTCGACTTCTTGTGCACCACCGTCACGTGGCGCAGGACGTCGCGCTTGCGCCGGGACTCGTAGCGGCAGAGCGGGCAGCGGTAGAACTTGATGAAGATGTCCGTGCCGTCCGTGTGCAGCTCGATGTGCTTGGTGAGGTTCTGGCGCGAGCTGAACTGACGTTTGCACAGCTTGCAGAACAGCTGCTTGAAGTCGAACCCCACCGAGAGCTTCTGAGGGGGTCTCCCAAGAGTCCCACTGCCACTACTAGTACCACCGGTGCTGTTGATGGAAGTGGAACGAGTTGATGTCTTGGGGCTGCTCCCACCCTCTTCCTCTTTGATCTTTTGACCTGACTTGGTTGCCACGGTGACGCCCTTCCTGTCCGTGTCCTTCCGGTCCGTGTCGCCAGGCGACGAGGCGGGGCTGGAGTCAGGGTCGTCCCAGGATTCAACCGCCTCCTCCTTCATGCTCAAGCTGTTGCTAGGGGTGCTGTCAGTGTTGGTGGCTGTTTTGCTGTTGTTGGTCACCGTGGATGTGGTTGCGGTCGTGGAGACGGAGCTAACGTTCTTGAGATTGTAGATCTTGTGGACGATGCGCATGTGTCTCTTTAACATGACCTGGGAGCTGTACTTTCTCTTGCAGAGCAGACAGCGGCAGGAGGCCAGGTTGTACAGGGCCGATGCCAGGAGAGAAGGGGCAGGGGGCACCGCGGTGGAGGCTTTGGGGGGCTGAGGGGTGGTAGCCCCCGAGGCTCCTCCGCTCTTCGGGGTGTGACCTCTCGCGGGGGAGGAGCTGGCGCTCTTGCGGGGCGGCGTGGCCTCCAGAGACAGCGGCTGGCCGGGGCGCGTGGCTATGTCCGGCGTGATGGTGTCCCGACGCAGGCCGCGGTGCACCTCGTCAAAATGGCGCCGCACGTTGGCCTTGGTGGCAAAGGACTTGAAGCAGACGGGGCAGGACTTGCCGCTGGGCGTGTGCAAGGGGCGAGACCGACCTTTGACCATGGAGAGGAGGCTGATGGGAACGGTGCGCGTCTCGGTGAACTTCCGGAGCTCCTCCAGCTTGGTCTGGTGCATCTTGCGACAGTGGCGGCGGATGCTGCGGCGAGAGTTGAAGTCCTTACCACACAGGCAGCACGAGATGGTAACGTC

Function

NR:

description
zinc finger protein 800-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1976442 True 1672 TUCP 0.62 1 29890286 29891957

Neighbor

gene id symbol gene type direction distance location
LOC118942782 NA coding upstream 260276 29624282 ~ 29630010 (+)
LOC110501056 LOC106576126 coding upstream 638377 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 695490 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 706335 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 722015 29080304 ~ 29168271 (+)
LOC110500208 LOC106609208 coding downstream 88927 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 101488 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 110447 30002404 ~ 30009586 (+)
cin cin coding downstream 181490 30073447 ~ 30075203 (+)
LOC110501059 LOC106609213 coding downstream 207413 30099370 ~ 30113179 (+)
G1725308 NA non-coding upstream 2256 29887139 ~ 29888030 (+)
G1725309 NA non-coding upstream 3295 29886565 ~ 29886991 (+)
G1725307 NA non-coding upstream 5481 29884499 ~ 29884805 (+)
G1725306 NA non-coding upstream 7359 29882523 ~ 29882927 (+)
G1725187 NA non-coding upstream 236278 29653740 ~ 29654008 (+)
G1725313 LOC106609204 non-coding downstream 99 29892056 ~ 29892403 (+)
G1725314 NA non-coding downstream 2525 29894482 ~ 29894725 (+)
G1725315 NA non-coding downstream 3179 29895136 ~ 29895342 (+)
G1725316 NA non-coding downstream 3566 29895523 ~ 29895869 (+)
G1725318 NA non-coding downstream 5440 29897397 ~ 29897788 (+)
G1724262 LOC106609200 other upstream 630357 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 676003 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1546552 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1565669 28311018 ~ 28335924 (+)
G1722079 NA other upstream 3068351 26821647 ~ 26821935 (+)
G1726209 LOC106609221 other downstream 690045 30582002 ~ 30590636 (+)
G1726222 NA other downstream 713343 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 989886 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1248640 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1557439 31449396 ~ 31450117 (+)

Expression


Co-expression Network