G1725325


Basic Information

Item Value
gene id G1725325
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 29914035 ~ 29916320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1976455
GAAAATACACATCTAAATGTGTTGATAACACCATGGGGACAACAGGATAAAATAGTCACCCAGGAGTAGAAAGCACATGATGGACGCCACCACAGACTGATAAAATGAACCAGTGACTATTTCATAGTAAGAGCTCAACAAGAACCTGGTTCTGCTTTATTTACAGTGAATACAAAAATAAGGCCTTACTAACAAAGAGACATCCATGTCCTGGGTTAGTGAGGAGACTGCACTGAACCACTAGTCTACTCAAGTCTGCGTCattctctatagtgcactacttaggcactgTATTTCCCCGATACAGTGCCTTTGGTTTGATCAGGGCACGCATATTAGGgcattggtcaaaagtagtgcactacagggaaCAGCGTGCCATTTCAGACCAACACGTAGGGAAGacctcaattgcatactcctcgtgTCCTCTCTCTTGCCGTCATTATcgaaacccattggaggagaaggtcagaatgggcgggacctctggctttctcatccaacgGGTTTTGAGAAGACGAGGAAAGAGGACACGAGTTCAATTAGACTGCTTATCTGCTGTTCCACACTCAGTAACAAATAGCGAGGAGAGGAGAAGCAAAGTTAACATTCAGGAATAATACCTAGTCAGTCACGTGCCGTTTGCTTACCTAAATGACTGGAGAGGGGCATTGGTGGCTCCAGACCTGACCAATCAGTAGTGCACACATTTTCAGTGATCGAACAGTAACTTGTAATTGATGAGTTATAAACTGATATGTATTCTGTAGGTCTATTACTATTTTGGGACAAGTTACATGCCATCGACATTGACCACTAGCAGAAAGCGAGCATATAGGAGTCATTTGAGTGTGTCGGAGGTCATCCGAGATGGTGAAAAGAGCCAATACTTTCACCTACGAGAACTTCTAGAAATATAGAGTGCTGCAGGTGAGGGCCTAAGGACTTGGAAGAGAGTGCACTGCTGCAGAGGCAGGGTCTGAAGGCAAAACGGCAGGCATAGAAACATTCCCCCACTGTACCTACTTTTCCCAGCCCCTCCCCCTGGACCATGCAGACCTACAGTGTTTGTGATTTCCCTTAGCCATGGAGACACATTCagtaaaattgtaaaaaataaaacatttaaaaataaccTTGTCTGAGATTCAGATAGCCTATACATTTCAAACTCTGGACCTCAATGTCAATTCCAttgcattttttcattgttcccatCTAAAttggggactgatttagacctgggacaccaggtgtgtgcaattaatgatcaggtagaacagaaaaccagcaggctccagacctcatggggtaagagttgagtacccctgccCTACACTGTAGCCTAAAGTACACTGGTTTATAAAGGGGATTGAAGTCACAAGGAATACAGGCCTAGTCTTCATATTTACTGTTGTTGACAAAACACCtttacaaatatatacagtgcctagtgaaagtcgacacaccccttgcacagtcttcGCATTGTGCAGCCTTACAATTCCATCTAAAAGGGGAATACATTAGATGTTTTTATCCTTCCGATCTACAAAACCGTCAACATTTTCAAAGCGAAAGAAAATGAAAGAACATTTTCCAAAttcattacaaataaaataaaataaaaagttgttTTGATTGTGCGTGTCTTCCCACCCCAGAGGTCATACTTGGTGGGAAGCAAATATCTATAGAAATAGAAGTAGATTAACGATCTGGGCATATGAGGAAAAAGTGCAAAAGAGAGTATCTGAAAAAGCCTTATTCTTCCTTCAGGCAACCACTGAACATCCCCATGTATGGAACAGTAGGGGCGCCACCGCTGTTCTGAAAAACACATCTAAATTACCTAAAGTAACTTCCTATCACAAGAACTCTCGAGACAGAAGTCAAATTCCTGTCTGGCAACCACCACATTGCTCTAAACGCCACCTTCGTTTTCAGATCCGGAAAgacaaaggaggagaggaggagaagattagactattgagatgcagcccatgtcAGTGATGTCCCTGTAGAGCATCTATCACTGACAGAACAGAAGAACACACTGCAGTGGAAACCAGAGGTATTAAAAGGACTTGGCTAGTGCCATATGTACATTTCTGTAATGTACATATCAAATCAAGCACGTCTGTCAGAGACCagtggaagagaaagagaagtcATGTTGAAAGGTAGAAACATTGGAAGAAGTGTGAAAAGGGAGAACCGCCGGCAAAAAGGACCCTTAAAAATACAAGTCACCAAGCGGTTAAAACACTTTAGCTCGAGTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1976455 True 2286 lncRNA 0.43 1 29914035 29916320

Neighbor

gene id symbol gene type direction distance location
LOC118942782 NA coding upstream 284025 29624282 ~ 29630010 (+)
LOC110501056 LOC106576126 coding upstream 662126 29247917 ~ 29251909 (+)
LOC110500200 LOC106609198 coding upstream 719239 29189035 ~ 29194796 (+)
LOC110500199 LOC106609197 coding upstream 730084 29173599 ~ 29183951 (+)
cog5 LOC106609192 coding upstream 745764 29080304 ~ 29168271 (+)
LOC110500208 LOC106609208 coding downstream 64564 29980884 ~ 29993056 (+)
LOC110500209 LOC106609209 coding downstream 77125 29993445 ~ 30002054 (+)
LOC110500210 LOC106609211 coding downstream 86084 30002404 ~ 30009586 (+)
cin cin coding downstream 157127 30073447 ~ 30075203 (+)
LOC110501059 LOC106609213 coding downstream 183050 30099370 ~ 30113179 (+)
G1725322 NA non-coding upstream 5486 29908315 ~ 29908549 (+)
G1725320 NA non-coding upstream 10815 29903001 ~ 29903220 (+)
G1725318 NA non-coding upstream 16247 29897397 ~ 29897788 (+)
G1725316 NA non-coding upstream 18166 29895523 ~ 29895869 (+)
G1725315 NA non-coding upstream 18693 29895136 ~ 29895342 (+)
G1725327 NA non-coding downstream 7245 29923565 ~ 29923867 (+)
G1725338 NA non-coding downstream 16508 29932828 ~ 29933028 (+)
G1725339 NA non-coding downstream 17219 29933539 ~ 29933773 (+)
G1725340 NA non-coding downstream 17611 29933931 ~ 29934362 (+)
G1725341 NA non-coding downstream 18309 29934629 ~ 29934853 (+)
G1725312 LOC106576088 other upstream 22078 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 654106 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 699752 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 1570301 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 1589418 28311018 ~ 28335924 (+)
G1726209 LOC106609221 other downstream 665682 30582002 ~ 30590636 (+)
G1726222 NA other downstream 688980 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 965523 30881776 ~ 30889293 (+)
G1726863 NA other downstream 1224277 31140597 ~ 31141090 (+)
G1727146 NA other downstream 1533076 31449396 ~ 31450117 (+)

Expression


Co-expression Network