G1726209 (LOC106609221)


Basic Information

Item Value
gene id G1726209
gene name LOC106609221
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 30582002 ~ 30590636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1977415
atcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctgtaaacggctgttttttaatggaatatctacatagacgtacacaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgttagctaatccaagtttatcgttttaaaaggctagaaaacccttttgcaattatgttagcacaactgaaaactgttttTCTGATTAAAGAACCAATGAaataaactggccttctttagactagttgagtatctggagcatcagcattcgtgggttcgattacaggctcaaaatggccagaaacaaataacttattTCCGAAACTCGTCAGTcgattcttgttctgagaaatgaagactatgAAGAAGGAAATGAAGGAAatgaagaaactgaagatctcatacaacgctgtgtactactcccttcaaagaacagcgcaaccagaatagaaagaggagtgggaggccccggtgcacaactgagtaagaggacaagtacattagagtgtctagtttgagaaacagacgcatcACAAGTCCTCAACCGACAGCATCATTAAAGAGAGAGCAAGAATTTCTCAgagcaagaatagactgatgagtttcagaagaaagttctttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccacgtactcaactagtctaaagaaggccagtttcattgcttatttaatcagcacaacagttttcagctgtgcttacATAATTGCACAAGGGTTtaataatgatcaattagccttataatgataaacttggattagctaacacaacatgacattggaacacaggagtgatggtttttGATAATGGGCCTGTGTACGCCTatgtatatattccataaaaaatgatttacaacgttaacaatgtctacactgtatttctgaacaatttgatgttattttaatggacaaaaaaaatgtgcttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgtatgtacagtctgtgtgtgcctctgtgtgcgTCAGACTCGGGCAGACTGGCAACGTTCAGCTCAGTCTGACCTGAGCCACTACCTGAGCGGAGGGGCTCTGCTCATATTTTAGCTCCCTTTGTCTGTGACAAATGGCTGAGCTCTAAAAgccctgtccatggtgctgaaggcTGCAGTGATGTATGAGGCAGGTCCTGTCTGATAAATCCTCCATGTCACTCGGTCCCTGACAGACATTCATCATGTCTGGTATTTTTATGTTCGGGACTCCAGCATCGGATGCTTAATGAAACAAATATAATGCGATTTTCCGATTCCGACTGCTTTGGAGCGAGCTTTAACCGGCTGACTTCCCTTGCAGAGCGTTGTCATTGGGACATTGTGTCTTTCCGCTCTACATGACTGTGACACTGACTTTGCTGGGTTTGTTCAGACCACAGACCTCTGTCTAAAGAATGAACATGTTCCTAATGAGCCAGTTAATGAGGCTGTATTGGGTTGTATCTGGGAATAACAATGTAGACTAAAATACATACAAACTCGTAAGATACAGTATATTCACATGGTGTTACAACAGGCATTTTTGCTCTTATATGAAATGCTGGGTGATCGTTATCAAGGTTTCCTGGCAATATAAAGGTCAGGAACACAAAAGGTTGTATAGTGTTTTCATCAAGTGTGATGATTGTCATGTAGTGAGATAATAAAATTATTTCAGCACTctgaagaaaggggagagagggactaACCCTATGATTGCAAAGAAACGTTGatgtttattacatttttttcctcaGCACAGATTCTTATCTCAGTCCCAGTTGTGCCCAGATATCACAGACAGTACAGTCAATATAAAAATGGCTTTTATAACTTTACACCCAAAGCAACGCaacgtttttaaaatgtttatatgCCAAAAATACTAAGAATGTATTTTCACTAAAAGTACTTGAGATTAGCTTGTGAGTCTGCAGATATGACATGGCCTTGTTGTTATTTCTCTGTAGTACTTCTTGTGTACTTCCTGTGTACTTCTTGTGTAGTTCTTGTGGTAGGCACTTACCGGGGCATAACAACCCACTgagcacagacgtcagttcaacgtctagttttgattttcatttggttgagttgtcaacttgAATtaaacgtgaaatcaacaacaaattccaccatgtcattggatttaggttgaaAGTTGGACGGGAAAAGACGAAATACCCTTTTATGTTGATGACATTTTCCCagtccaatcagttttccacgttgattcaacgtcatcacgtttcattttttgttgttgaaattatgtggaaacaatgttgatttaaccagtttttgcccagtggggaaACCACAATCATTACTCTCTGGGAGATGTCAGGACAGACAATCACATTCAGACCATGAACTCACCATCAACTCAAGGTCTGCCTTTGTCAAGATTCTTAGATCCTTCTTCGAACACTTGCAAACAACCATTTCTTTAACACCCTATCTATATACTGTACCCATACGCAGTATAACTGTATTTAGCATAATGATGTTGTTATTAATGAGAGTCATTTGTTTCTGTCATTATTAATTTCACACCAGTTTACTGTCCAGATATTACACCAGAGGATTTATGTTTACATTAGCAGATAGAATATATAACAATTTATCAATGAAAAAACAAAAATCCTCTCTTTCTAAATAGAAAAAGGGTAATATTCATCAAAATTTTTACACCATAGTCATTATTATTGTCTATTCTACTACATAATTCCTCCGTTATAGACAGTTGTCATCTCTATCTCACCTATGGATGTTGTACAGCACAGACGCTATTGCTTGGGGACCACAAGGACAGTTCCACTATTCTTAACACATTTAACAGTCAATTACAAGAGAGAGAACACCATCGTCATCATATTCTCTTATTCTATCTGTACTCTGTGAAGAACCCAGGGATGTCGAACTGTGTGTTTTAGCAGGGAAAACGATCTCCCTGGTGATGTTAGCTTGATAAAGCAATTGAATTGTTATAAAGCCGCCACGTCAGATACTATGTTGTAACCAAGAGAGTGGTCTGTCTCCCTCCTACCGGTTACTCCTCAATTCAATGATGGTGTATATTTTTCCAGAATGTCAGAGTCAAAGCTAAAAGGAAGCCGATGCACATTTTTAAACAGTTACTGCAGGTTTCTCCTTTTTGTACGCTTTGTCCATTCTTTGCGATTGTGTGGTAAGCTCCACGGGGGTTTAGTTCTTTAAAAGGCATTGTCAGATACATTTATGACTGTGGGTTTCACTTCCACTGCAGTTGGCAGTCCGTTCCCTGAGACCCACAGCCTCGTAAAAGGAGAGTGCAGGCCGGCCACCTGCGTCAAAGACAATTTGGAGTGGCATTTCCTTAAATCCCCACAAAGGTGGTGGTTCCTCAGAGACACATAAATAAGCAGACAGGCCACTGAAATCACAGCGAGAAGCACACCAAAGACAGCAATTACTGCAGCGTGCCACTTTTCAGTGTCCTTGGCCGCCAGCTCTAATCCCTTTGTGGTGACATTGACACATTTGGTGTCGTGTTTGTAGAGGATGCCACGGATGTCCACACACACCTTGTACTGGGTGGCAGGAGTCAGATGTGTGAGATTGTACACTTTCACGTCAGACGGTACGCGTGCAGTGAATGCCATGGTCGGGTGGTTGGGGTCGGAAGCCTTGTACCACTTTATGTTAGGAGCCAGACCACCATGGGCGGCTTTCCAGGCCACCAGGACCGAGTTGGACTGCACTGATTTGATGTTGACGTCCAAAGAGCCGTTGGCAGGTCGGGGGAAGTATCCATCCACCTCCACCGAGACTGACTTTAGGTCTGCGCCGACCAGATTGTGGGCAACGCAGGTGTACAGTCCAGCCTCGTTCTCTGTTACATCGTAGATGTCAAACGTTCCCTCTGAGTGCATGTAGTATTTATCTGAAACGGTATTGGGCAGGACCCTGGTACCAGAAGGTGTGATCCAGTAGATGTCCGGTTCGGGTTCTGCAAAGGCCCGGCAGTGAAGCGATACAGAACTCCCGTTGTCGACGCTGACGTGCCCGGGCATGCTCTCAGGAGAGATGAGAGGCAGACAGATCTCTGTCATCTCCCTGAAGTGGACCTGCCGGACATGCTGGCCCTCGTACTCGGGAGGCTCGACGCAGAAGAGTGAATCCGGTTCCATGAAGCGTATGTTGGTCTTGTTCATGTTCATCCAGCGGACCACACAGTCGCAGCGGATGGGGTTGCTGTGCATGCTCACCTCCCGCAGGTTGGGGAGGGACTCCACGGTAATCCTGTGCAGGGCGCTGAGCGCGTTCCCATTCAGCATCAATGTCTCCAGCCTGGGCAGTTTGTAGAAAGCATTGGGATGGATGTAAGAGAGCCTGGGGTTGTTGGTGGCCTCGATCTTAGTCAGTTCGGGGAGGTTGTTGAGGGCGAAGCTGTCGATAGAGACCAGTTCCGGCATGCTGTTAATGCCCAGCTCTTTGAGGTGGAGCATGTCTGCAAAATCTCCACGCTGTATCCTCCCTATGGGATTCTTGTTTAGGTCCAGAAACTTGAGGTTCTTTAAGTTCCTCAGAGCTGCGTGGGGAACTTCGGGGAAGGTGTTGTCGTAGAACGAGATGCTCTCCAAGTTGTCGAGGCCAGATAGAGCGCCGTCGGATAACTGCGATAGGTTCATCCTGGTGAGAACTAGACTTCGGAGATTACGAAGTGGCTTGAAGTTCATGTCTTGAACGGAGGTGATCGGATTCTCCCCAATCATGAGTATTTCCAGATTGGGTATGGTGTCGAACCACTCACTACTGATCGTCTGCAGCTTGTTGGAGTTGAGGTGGAGCCGGAGGAGGTTGTGGAGACCCTGGAACGCcgtgggggagatggaggagatcaGGTTGTGGTTCATGTAAAGCTCCTGAAGGTTGGCCAGCTCTGCCAGACAGCTATCTGGCAGCTGGCGTATCCAGTTCTCCTCCATGTGCAAGGACAGCAGCTGAGGCAGCCGCCCGAGGTGGATGTCACTCATTGAGGACAAGTTGTTTTGCGACAAGTCAATCTCTGTGATGTTGGCCAGGTAATCCAAAGGTCTCTCAATCTTTGCAATGTTGTTGGTCTGCAGCAATAGCACTTGTGTGTCCGTTGGTAATCTCCCAGACAGAGTGAAAAGTCCCAAGTCATTACAGTCAACAATTGGGGCTTCCATGTACACGGAGCTGGGAGAGAACCAGGGTctgatctcacacacacatagctgAGGGCAATCGACTCTCTCCTCAGAGGCCAGAACAAAGGCAGTCATGGCAAGGCCCACGAAGAAACAATCTACAAATGACACGTCCTTCATATTGGCCCGATTCCCTCCAGTAAGTAATTGGTCTTTGTAGATTAAGTGGTCTGAGCTGTTAACTTCACAAATAATGAATAATTTGTTACTGTTGCTATAGCGACTGACTACCCCCCACTGGTAGGGAGGGTTTCCCAGGGGGCTTTTGTTTTGCTGTGGTTGTACTGGCGTCCAACTGCTCAATTTTCCCTCCTGGGCGTAAGGGTTGGAGTCAAGACTTCAGTCATACAGGCCCAAGTAGATAACAATGAACATATACCTCAGGAAGCTACAGTCCTGCTAAGCACATCTGGGTTAGCCTCCATTAACGCTCTGCTTTCTTTTGAAGATGAATCACATCCATCTCTCGACGTTGTTACTAGCTGCCAGCATCGTCAAATGAGTCC

Function

NR:

description
leucine-rich repeat neuronal protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1977415 True 5804 TUCP 0.44 2 30582002 30590636

Neighbor

gene id symbol gene type direction distance location
LOC110500929 rs3a coding upstream 36836 30544390 ~ 30545166 (+)
LOC110500216 LOC106609220 coding upstream 171721 30264099 ~ 30410281 (+)
LOC110501060 LOC106576074 coding upstream 363226 30169479 ~ 30218776 (+)
LOC110500212 cr3l2 coding upstream 415350 30139073 ~ 30166652 (+)
LOC110500213 LOC106609216 coding upstream 443639 30135626 ~ 30138363 (+)
LOC110500218 tnni1 coding downstream 127944 30718580 ~ 30725274 (+)
LOC110500219 LOC105029072 coding downstream 159374 30750010 ~ 30807982 (+)
LOC110500220 tnnt2 coding downstream 217525 30808161 ~ 30821295 (+)
LOC110500223 LOC106609230 coding downstream 250889 30841525 ~ 30851119 (+)
LOC110500930 LOC106609235 coding downstream 280637 30871273 ~ 30877399 (+)
G1726141 NA non-coding upstream 84693 30497077 ~ 30497309 (+)
G1726139 NA non-coding upstream 86410 30495125 ~ 30495592 (+)
G1725817 LOC107575789 non-coding upstream 170386 30411269 ~ 30411616 (+)
G1725840 NA non-coding upstream 284420 30296813 ~ 30297582 (+)
G1725481 NA non-coding upstream 335147 30246541 ~ 30246855 (+)
G1726221 NA non-coding downstream 14070 30604706 ~ 30604907 (+)
G1726232 NA non-coding downstream 34144 30624780 ~ 30624980 (+)
G1726310 NA non-coding downstream 44578 30635214 ~ 30635420 (+)
G1726311 NA non-coding downstream 45730 30636366 ~ 30636579 (+)
G1726330 NA non-coding downstream 61814 30652450 ~ 30652811 (+)
G1725312 LOC106576088 other upstream 690045 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1322073 29256778 ~ 29259929 (+)
G1724234 LOC106609199 other upstream 1367719 29209169 ~ 29214283 (+)
LOC110500183 LOC106609180 other upstream 2238268 28341423 ~ 28343734 (+)
LOC110501048 LOC106609163 other upstream 2257385 28311018 ~ 28335924 (+)
G1726222 NA other downstream 14664 30605300 ~ 30611361 (+)
LOC110500226 LOC106576059 other downstream 291207 30881776 ~ 30889293 (+)
G1726863 NA other downstream 549961 31140597 ~ 31141090 (+)
G1727146 NA other downstream 858760 31449396 ~ 31450117 (+)
G1727181 NA other downstream 917420 31508056 ~ 31508372 (+)

Expression


Co-expression Network