G1726797


Basic Information

Item Value
gene id G1726797
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31076628 ~ 31076844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978075
GGCCATAAAAGAGTGAATAGATCCCTTTTCGCAGACACCTGGGGAACTTTCTAGTCATGGAAAAGTGTCTCTAAAATCAGGAAATCTCTACAGTACTGCCCAGAGAGGAACAACTCCTCACCAAAATAAATCCATTAAACTCATTACAGATACACCCACTGTcccgtatactccctctccggcgctCAAATTCGTCAGGCTGCTCATTATTGCATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978075 True 217 lncRNA 0.44 1 31076628 31076844

Neighbor

gene id symbol gene type direction distance location
LOC110500235 LOC106609242 coding upstream 10977 31046030 ~ 31065651 (+)
LOC110500233 LOC106609239 coding upstream 78678 30990205 ~ 30997950 (+)
LOC110500229 LOC106609237 coding upstream 93879 30942609 ~ 30982749 (+)
LOC110500231 ahcyl2 coding upstream 136132 30896004 ~ 30940496 (+)
LOC110500227 tmem209 coding upstream 181499 30889372 ~ 30895129 (+)
trnaa-ugc-149 NA coding downstream 27298 31104142 ~ 31104212 (+)
LOC110500239 LOC106609244 coding downstream 350983 31427827 ~ 31436839 (+)
LOC118942919 NA coding downstream 387408 31464252 ~ 31465847 (+)
LOC110500240 LOC106609248 coding downstream 416618 31493462 ~ 31497830 (+)
tmem168a LOC106609249 coding downstream 491551 31568395 ~ 31589029 (+)
G1726597 NA non-coding upstream 40393 31035810 ~ 31036235 (+)
G1726589 NA non-coding upstream 51115 31025201 ~ 31025513 (+)
G1726587 NA non-coding upstream 55410 31020970 ~ 31021218 (+)
G1726578 NA non-coding upstream 66762 31009580 ~ 31009866 (+)
G1726569 NA non-coding upstream 74871 31001220 ~ 31001757 (+)
G1726840 NA non-coding downstream 39411 31116255 ~ 31116553 (+)
G1726945 NA non-coding downstream 152137 31228981 ~ 31229201 (+)
G1726957 LOC106609243 non-coding downstream 171253 31248097 ~ 31250779 (+)
G1727049 NA non-coding downstream 206991 31283835 ~ 31284089 (+)
G1727050 NA non-coding downstream 207249 31284093 ~ 31284504 (+)
LOC110500226 LOC106576059 other upstream 193015 30881776 ~ 30889293 (+)
G1726222 NA other upstream 465267 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 485992 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 1184671 29890286 ~ 29891957 (+)
G1724262 LOC106609200 other upstream 1816699 29256778 ~ 29259929 (+)
G1726863 NA other downstream 63753 31140597 ~ 31141090 (+)
G1727146 NA other downstream 372552 31449396 ~ 31450117 (+)
G1727181 NA other downstream 431212 31508056 ~ 31508372 (+)
G1727220 NA other downstream 487291 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 1037892 32114413 ~ 32144886 (+)

Expression


Co-expression Network