G1727049


Basic Information

Item Value
gene id G1727049
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31283835 ~ 31284089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978334
agtacaccacatcagtcactggtttCATCAACatgtgcatcgatgacgtcgtccccacaatgactgtaagtacataccccaaccagaagccatggattacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcagacttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacaacatttattggatatttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978334 True 255 lncRNA 0.41 1 31283835 31284089

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-149 NA coding upstream 179623 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 218184 31046030 ~ 31065651 (+)
LOC110500233 LOC106609239 coding upstream 285885 30990205 ~ 30997950 (+)
LOC110500229 LOC106609237 coding upstream 301086 30942609 ~ 30982749 (+)
LOC110500231 ahcyl2 coding upstream 343339 30896004 ~ 30940496 (+)
LOC110500239 LOC106609244 coding downstream 143738 31427827 ~ 31436839 (+)
LOC118942919 NA coding downstream 180163 31464252 ~ 31465847 (+)
LOC110500240 LOC106609248 coding downstream 209373 31493462 ~ 31497830 (+)
tmem168a LOC106609249 coding downstream 284306 31568395 ~ 31589029 (+)
LOC110500245 LOC106609252 coding downstream 396851 31680940 ~ 31684896 (+)
G1726957 LOC106609243 non-coding upstream 33056 31248097 ~ 31250779 (+)
G1726945 NA non-coding upstream 54634 31228981 ~ 31229201 (+)
G1726840 NA non-coding upstream 167282 31116255 ~ 31116553 (+)
G1726797 NA non-coding upstream 206991 31076628 ~ 31076844 (+)
G1726597 NA non-coding upstream 247600 31035810 ~ 31036235 (+)
G1727050 NA non-coding downstream 4 31284093 ~ 31284504 (+)
G1727055 NA non-coding downstream 3888 31287977 ~ 31288180 (+)
G1727084 NA non-coding downstream 36190 31320279 ~ 31320880 (+)
G1727143 NA non-coding downstream 163760 31447849 ~ 31448075 (+)
G1727147 NA non-coding downstream 172080 31456169 ~ 31456407 (+)
G1726863 NA other upstream 142745 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 400222 30881776 ~ 30889293 (+)
G1726222 NA other upstream 672474 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 693199 30582002 ~ 30590636 (+)
G1725312 LOC106576088 other upstream 1391878 29890286 ~ 29891957 (+)
G1727146 NA other downstream 165307 31449396 ~ 31450117 (+)
G1727181 NA other downstream 223967 31508056 ~ 31508372 (+)
G1727220 NA other downstream 280046 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 830647 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 other downstream 873823 32153116 ~ 32162456 (+)

Expression


Co-expression Network