G1727158


Basic Information

Item Value
gene id G1727158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31473895 ~ 31474128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978445
ggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggtgttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagagcagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccgaatacttgttttccacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978445 True 234 lncRNA 0.43 1 31473895 31474128

Neighbor

gene id symbol gene type direction distance location
LOC118942919 NA coding upstream 8048 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 37056 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 369683 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 408244 31046030 ~ 31065651 (+)
LOC110500233 LOC106609239 coding upstream 475945 30990205 ~ 30997950 (+)
LOC110500240 LOC106609248 coding downstream 19334 31493462 ~ 31497830 (+)
tmem168a LOC106609249 coding downstream 94267 31568395 ~ 31589029 (+)
LOC110500245 LOC106609252 coding downstream 206812 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 211279 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 271645 31745773 ~ 31800121 (+)
G1727156 NA non-coding upstream 2085 31471519 ~ 31471810 (+)
G1727154 NA non-coding upstream 6174 31467185 ~ 31467721 (+)
G1727148 NA non-coding upstream 10644 31457024 ~ 31463251 (+)
G1727147 NA non-coding upstream 17488 31456169 ~ 31456407 (+)
G1727143 NA non-coding upstream 25820 31447849 ~ 31448075 (+)
G1727165 NA non-coding downstream 7875 31482003 ~ 31482283 (+)
G1727138 NA non-coding downstream 17388 31491516 ~ 31492308 (+)
G1727141 NA non-coding downstream 25875 31500003 ~ 31500317 (+)
G1727176 NA non-coding downstream 27850 31501978 ~ 31502194 (+)
G1727182 NA non-coding downstream 34390 31508518 ~ 31508749 (+)
G1727146 NA other upstream 23778 31449396 ~ 31450117 (+)
G1726863 NA other upstream 332805 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 590282 30881776 ~ 30889293 (+)
G1726222 NA other upstream 862534 30605300 ~ 30611361 (+)
G1726209 LOC106609221 other upstream 883259 30582002 ~ 30590636 (+)
G1727181 NA other downstream 33928 31508056 ~ 31508372 (+)
G1727220 NA other downstream 90007 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 640608 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 other downstream 683784 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1847325 33321453 ~ 33321761 (+)

Expression


Co-expression Network