G1727184


Basic Information

Item Value
gene id G1727184
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31512707 ~ 31512922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978471
cctccagctcggccttggggcggcaatattctcctggctctgcccagggtcctttcccgtctagaatctcctcccaagtccatctctccaaatagtgcagcctctcccactgctgctgctgctgctcctgctgctgctttttccgttgcccattaccacgccgcttggttctgttgtggtgggtgattctgtaacgacgttcgtctgtacgagagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978471 True 216 lncRNA 0.57 1 31512707 31512922

Neighbor

gene id symbol gene type direction distance location
LOC110500240 LOC106609248 coding upstream 14877 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 46860 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 75868 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 408495 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 447056 31046030 ~ 31065651 (+)
tmem168a LOC106609249 coding downstream 55473 31568395 ~ 31589029 (+)
LOC110500245 LOC106609252 coding downstream 168018 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 172485 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 232851 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 360626 31873548 ~ 31894544 (+)
G1727182 NA non-coding upstream 3958 31508518 ~ 31508749 (+)
G1727176 NA non-coding upstream 10513 31501978 ~ 31502194 (+)
G1727141 NA non-coding upstream 12390 31500003 ~ 31500317 (+)
G1727138 NA non-coding upstream 20399 31491516 ~ 31492308 (+)
G1727165 NA non-coding upstream 30424 31482003 ~ 31482283 (+)
G1727195 NA non-coding downstream 10490 31523412 ~ 31523653 (+)
G1727200 NA non-coding downstream 15560 31528482 ~ 31528710 (+)
G1727203 NA non-coding downstream 19096 31532018 ~ 31532255 (+)
G1727204 NA non-coding downstream 20406 31533328 ~ 31533589 (+)
G1727215 NA non-coding downstream 39571 31552493 ~ 31552789 (+)
G1727181 NA other upstream 4335 31508056 ~ 31508372 (+)
G1727146 NA other upstream 62590 31449396 ~ 31450117 (+)
G1726863 NA other upstream 371617 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 629094 30881776 ~ 30889293 (+)
G1726222 NA other upstream 901346 30605300 ~ 30611361 (+)
G1727220 NA other downstream 51213 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 601814 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 other downstream 644990 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1808531 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2197170 33709461 ~ 33869016 (+)

Expression


Co-expression Network