G1727200


Basic Information

Item Value
gene id G1727200
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31528482 ~ 31528710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978487
GGAAGACCATTTAGCCTGGAGAACACCACAGGAGATTACTCGGGCTGGTTCAGTGCAGGGACTGGCGACTGAGGAGCTGCAGAGAGCCGACTCAACTCAGCGAGGATGGCGAGGCAGTGGAAAGATTTGCAAGGCGGAGCCAGGCTACTTGTAAGTCGTCCCAACCAACGCCGTTTGGACAGTGAAGGACGCAGGCTGACTAATTCCGCGAGCTATTCCCAATGAGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978487 True 229 lncRNA 0.56 1 31528482 31528710

Neighbor

gene id symbol gene type direction distance location
LOC110500240 LOC106609248 coding upstream 30652 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 62635 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 91643 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 424270 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 462831 31046030 ~ 31065651 (+)
tmem168a LOC106609249 coding downstream 39685 31568395 ~ 31589029 (+)
LOC110500245 LOC106609252 coding downstream 152230 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 156697 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 217063 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 344838 31873548 ~ 31894544 (+)
G1727195 NA non-coding upstream 4829 31523412 ~ 31523653 (+)
G1727184 NA non-coding upstream 15560 31512707 ~ 31512922 (+)
G1727182 NA non-coding upstream 19733 31508518 ~ 31508749 (+)
G1727176 NA non-coding upstream 26288 31501978 ~ 31502194 (+)
G1727141 NA non-coding upstream 28165 31500003 ~ 31500317 (+)
G1727203 NA non-coding downstream 3308 31532018 ~ 31532255 (+)
G1727204 NA non-coding downstream 4618 31533328 ~ 31533589 (+)
G1727215 NA non-coding downstream 23783 31552493 ~ 31552789 (+)
G1727224 NA non-coding downstream 39245 31567955 ~ 31568161 (+)
G1727427 NA non-coding downstream 72081 31600791 ~ 31601136 (+)
G1727181 NA other upstream 20110 31508056 ~ 31508372 (+)
G1727146 NA other upstream 78365 31449396 ~ 31450117 (+)
G1726863 NA other upstream 387392 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 644869 30881776 ~ 30889293 (+)
G1726222 NA other upstream 917121 30605300 ~ 30611361 (+)
G1727220 NA other downstream 35425 31564135 ~ 31564594 (+)
LOC110501063 LOC106609150 other downstream 586026 32114413 ~ 32144886 (+)
LOC110500252 LOC106609149 other downstream 629202 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1792743 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2181382 33709461 ~ 33869016 (+)

Expression


Co-expression Network