G1727224


Basic Information

Item Value
gene id G1727224
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31567955 ~ 31568161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978511
ATGTAATTGATGACTTTCAATTAAGGAAGGTAAGAAAGGTCAAGGTTTAGATGGCagttgtgcaatttagtttgtgtgtttcttgtttgaagtgcaatagtgtaataatcaggttatCTTCTTTATAAGTGTGTTATTCTATATGTGCATTTGTGTGTTATATAATTCGtgcaatttagttttatttgtgttttttgttAGCAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978511 True 207 lncRNA 0.30 1 31567955 31568161

Neighbor

gene id symbol gene type direction distance location
LOC110500240 LOC106609248 coding upstream 70125 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 102108 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 131116 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 463743 31104142 ~ 31104212 (+)
LOC110500235 LOC106609242 coding upstream 502304 31046030 ~ 31065651 (+)
tmem168a LOC106609249 coding downstream 234 31568395 ~ 31589029 (+)
LOC110500245 LOC106609252 coding downstream 112779 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 117246 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 177612 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 305387 31873548 ~ 31894544 (+)
G1727215 NA non-coding upstream 15166 31552493 ~ 31552789 (+)
G1727204 NA non-coding upstream 34366 31533328 ~ 31533589 (+)
G1727203 NA non-coding upstream 35700 31532018 ~ 31532255 (+)
G1727200 NA non-coding upstream 39245 31528482 ~ 31528710 (+)
G1727195 NA non-coding upstream 44302 31523412 ~ 31523653 (+)
G1727427 NA non-coding downstream 32630 31600791 ~ 31601136 (+)
G1727468 NA non-coding downstream 90194 31658355 ~ 31658590 (+)
G1727480 NA non-coding downstream 110317 31678478 ~ 31678731 (+)
LOC110501063 LOC106609150 non-coding downstream 575003 32114413 ~ 32144886 (+)
G1728051 NA non-coding downstream 629358 32197519 ~ 32220621 (+)
G1727220 NA other upstream 3361 31564135 ~ 31564594 (+)
G1727181 NA other upstream 59583 31508056 ~ 31508372 (+)
G1727146 NA other upstream 117838 31449396 ~ 31450117 (+)
G1726863 NA other upstream 426865 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 684342 30881776 ~ 30889293 (+)
LOC110500252 LOC106609149 other downstream 589751 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1753292 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2141931 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3871128 35439289 ~ 35484354 (+)

Expression


Co-expression Network