XLOC_003667 (slc45a1)


Basic Information

Item Value
gene id XLOC_003667
gene name slc45a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40649412 ~ 40674070 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007125
ATGATGCGAGGACAGGGGGAGACCGGAGGAGCAGCACGATAAAAGCTGAGAAATGACTGCGCCAGAAAGGACGAAAAAAGATGAAACGTTAAACAGCAGCGTCAACGCGATGCGCCGTCCCGTCTGCTGCCTGCAACCCAGTAATGCATGAAGAGCATCCCGGATAAAGTGTGATCAGAATGTCATCTCCTGGAATGGGGACCCCAAGCGACCCCCTGCTGTCCAGTCCTGTAGGGGGGAAGTTCGGGTCCGCTCAGGATGCCACTTGGAGACCCACTTTATCCAAAACCTCCAGTTTCCCAACATCCACCACACGGCACCTCAGTCACAGAGCCAACAACTTCCAGAGGCACCCGAAGCGCCGGAAACTGATCCGACCGTCCCCTCCGCCTCCCCCAAACACACCGTGTCCCCTGGAGCAGCTGGACCTGAGTGAACTCCCCCCGAGACGCACTTTTCCAGAGCTCCTCTTCAACGGCTGCATTCTGTTCGGGATCGAGTTCAGCTACGCGATGGAGACGGCGTATGTCACACCGGTGTTACTTCAGATGGGCCTGCCGGACCAGTTCTACAGCCTCGTGTGGTGTACCATCTGCCACCACCCGAGGGCAGAGCGGACGTTGAGGCCGTGGTGTGAGTGATCGATCGCAATACGGAAACCGAGTGATCGCAATGCGGAAACAGGCCCCGTGCGGAAGAACGAGCCAAATGTATTGTTTGGCGACTACACCAAATCTGGACTACGAATATGGACTCTCCGGCAGAGTGCGCCTGTATTGCTAAGCatcttttcttgttttgttttgctctgCTTTGCAATACATGAGGCACTGTTTTCGAAAACTCCAAGTAGCAAGAAAATCACGAACTGACGAACGAAGAACTGAATGAGGCAAAACTCATATTCGCATTCTTTTCCTCAGTCATGTGTAATATTTACATGAGCATGTACAGATATGAGATCTTCCACTAAGGAATATGATGTAAATAAGTGGCACTGTACAGGCAAACGCTCTGAGAAATTAAACAACTGTCGCACAGG
>TCONS_00007126
TGATGCGAGGACAGGGGGAGACCGGAGGAGCAGCACGATAAAAGCTGAGAAATGACTGCGCCAGAAAGGACGAAAAAAGATGAAACGTTAAACAGCAGCGTCAACGCGATGCGCCGTCCCGTCTGCTGCCTGCAACCCAGTAATGCATGAAGAGCATCCCGGATAAAGTGTGATCAGAATGTCATCTCCTGGAATGGGGACCCCAAGCGACCCCCTGCTGTCCAGTCCTGTAGGGGGGAAGTTCGGGTCCGCTCAGGATGCCACTTGGAGACCCACTTTATCCAAAACCTCCAGTTTCCCAACATCCACCACACGGCACCTCAGTCACAGAGCCAACAACTTCCAGAGGCACCCGAAGCGCCGGAAACTGATCCGACCGTCCCCTCCGCCTCCCCCAAACACACCGTGTCCCCTGGAGCAGCTGGACCTGAGTGAACTCCCCCCGAGACGCACTTTTCCAGAGCTCCTCTTCAACGGCTGCATTCTGTTCGGGATCGAGTTCAGCTACGCGATGGAGACGGCGTATGTCACACCGGTGTTACTTCAGATGGGCCTGCCGGACCAGTTCTACAGCCTCGTGTGGTTTATCAGTCCCATTTTAGGATTCCTCCTTCAGCCGATTCTCGGGGCCTGGAGTGACCGGTGTACATCTCGCTTTGGCCGTAGGAGACCTTTTATTTTTGCCCTGGCCATTGgggCTCTGCTGGGTCTAACACTGGTGTTGAATGGAAGAGACATTGGATCTGCGCTGGCTGACACCACTCTGGATCATAAGTGGGGGATCGTGCTGACGGTGTGCGGTGTGGTGCTGATGGACTTCAGTGCAGACTCAGCCGACAATCCCAGCCATGCCTACATGATGGATGTGTGCAGCCCAGAGGACCAGGACCGAGGCCTAAATATACACGCGCTACTGGCAGGTCTCGGTGGAGGCTTCGGCTACATAGTGGGTGGCATCAACTGGGACAAAACTGAGTTCGGAAGGACAATGGGCGGTCAGCTCCGCGTCATATACCTGTTCACCAGCATCACCCTGGCCGCCGCCACAGCCATGACCCTCACTAGTATCCCAGAGCGGCCTTTACCCCAATCCCAACCTCAAACCAGAAACACTCGAAACCTAAAGAGCCCCAATCTCCCTCTGCCTCCATCCCCGCCACCGCCTCCTGGAGCTGCTGCAGATCAGGATGAAGAGGATGAAGAAGAAGCTCTATATAACAGCCAGTTCTCCAATTGCCGCAACCCTGATCTTTTCGGCCGCTCCAGCAGTGCAAACGCACGTTTATACGCAGGCCTCACCAGCCCAATCTCCCCTCTAAGTCCTTTGACACCCAAATACGGCAGCTTTATAAGTCGAGATAACTCTCTCACGGGCATTAATGAGTTCGCATCCTCTTTAGGCACCTCCTATATAGACAGAGTATTAATTGAATGTTACACCGGACAGCAGACGCCGCAGCCAATGGAATGCGAGGCTGTTGCTGTGGCCCCGCCTCTTCCACCAGGAGACACGCCCCCTCCTCATGGACAAAGTGAAACGCTTGAAGTTCCACAGCAGATTAAGGTTTCACAGCCGAATGGAGAGCTGGCGACTGATGCGTTGCAGGCCGATGAGCAAAAACAAGCCATTGAGCCTGACGAGCAGCAGAATGAAGCTGCGGCAGGCTCTCAGAGAGGCAGTAGCTCAGGGATATTGAAGAGGCCACAGAGTCTGGCCTTAATGGAGGATCCGCTGATTGCTCCGAGCGCTGGATTGGATAACGGTCGTAGACGCACTGTTACTTTCAGTCAACAGGTGGCCAATATCCTGCTGAATGGCATGCGTTATGACAGTGACCTCAGTGGCAACCATGAAGCGGCAGATTCTCAGATGTCAATAAAGCTGCTCTGTACTGCCATCTACAGGATGCCTCCATGTTTACGAAGCCTGTGCACCAACCATTTCCTGGGTTGGTTATCGTTTGAGGGGATGCTGCTCTTCTACACTGACTTCATGGGGGAGGTGGTGTTTGGTGGAGACCCGAAGGCTCATCATGACTCAGAGGAGTACAAGCGCTACAATTCTGGCGTCAGCATGGGCTGCTGGGGCATGTGCATCTATGCATTTAGTGCTGCTTTTTATTCAGCCATTCTGGAGAAGCTGGAGGAGCGTTTCTCCCTGCGTTCTCTGTATTTTTTCGCCTATCTGGCCTTTGGTCTGGGCACTGGACTGGCCACCCTCTCCACCAACCTGTACGTGGTGCTGTCTCTCTGCGTCACCTACGGCGTCCTCTTCTCCTCTCTCTGTACGCTGCCTTACTCTCTGCTCTGCGAATACTACCAGAGCCCACAGTTCTGCGGCTCGTCGGAGGACGGCACCAGGCGTGGGATGGGGGTGGACATTTCCCTGCTTAGCTGCCAGTATTTCCTGGCGCAGATCCTGGTGTCGGTGGCGATGGGCCCTCTCACGTCGCTGGTGGGGGGGGCCCAGGGCGTGATGTACTTTTCAAGTCTGATGTCATTTGTGGGGTGCCTGTACTCCTCACTGTGTGTGGTGTACCATCTGCCACCACCCGAGGGCAGAGCGGACGTTGAGGCCGTGGTGTGAGTGATCGATCGCAATACGGAAACCGAGTGATCGCAATGCGGAAACAGGCCCCGTGCGGAAGAACGAGCCAAATGTATTGTTTGGCGACTACACCAAATCTGGACTACGAATATGGACTCTCCGGCAGAGTGCGCCTGTATTGCTAAGCatcttttcttgttttgttttgctctgCTTTGCAATACATGAGGCACTGTTTTCGAAAACTCCAAGTAGCAAGAAAATCACGAACTGACGAACGAAGAACTGAATGAGGCAAAACTCATATTCGCATTCTTTTCCTCAGTCATGTGTAATATTTACATGAGCATGTACAGATATGAGATCTTCCACTAAGGAATATGATGTAAATAAGTGGCACTGTACAGGCAAACGCTCTGAGAAATTAAACAACTGTCGCACAGG
>TCONS_00007127
CGCCAGAAAGGACGAAAAAAGATGAAACGTTAAACAGCAGCGTCAACGCGATGCGCCGTCCCGTCTGCTGCCTGCAACCCAGTAATGCATGAAGAGCATCCCGGATAAAGTGTGATCAGAATGTCATCTCCTGGAATGGGGACCCCAAGCGACCCCCTGCTGTCCAGTCCTGTAGGGGGGAAGTTCGGGTCCGCTCAGGATGCCACTTGGAGACCCACTTTATCCAAAACCTCCAGTTTCCCAACATCCACCACACGGCACCTCAGTCACAGAGCCAACAACTTCCAGAGCTCCTCTTCAACGGCTGCATTCTGTTCGGGATCGAGTTCAGCTACGCGATGGAGACGGCGTATGTCACACCGGTGTTACTTCAGATGGGCCTGCCGGACCAGTTCTACAGCCTCGTGTGGTTTATCAGTCCCATTTTAGGATTCCTCCTTCAGCCGATTCTCGGGGCCTGGAGTGACCGGTGTACATCTCGCTTTGGCCGTAGGAGACCTTTTATTTTTGCCCTGGCCATTGgggCTCTGCTGGGTCTAACACTGGTGTTGAATGGAAGAGACATTGGATCTGCGCTGGCTGACACCACTCTGGATCATAAGTGGGGGATCGTGCTGACGGTGTGCGGTGTGGTGCTGATGGACTTCAGTGCAGACTCAGCCGACAATCCCAGCCATGCCTACATGATGGATGTGTGCAGCCCAGAGGACCAGGACCGAG
>TCONS_00007128
tttttaaatgacatttaatagtTTGCCATGACTGAACTCCATACTTCTGCATCTCTCATGTATAACTCAGGTCTCGGTGGAGGCTTCGGCTACATAGTGGGTGGCATCAACTGGGACAAAACTGAGTTCGGAAGGACAATGGGCGGTCAGCTCCGCGTCATATACCTGTTCACCAGCATCACCCTGGCCGCCGCCACAGCCATGACCCTCACTAGTATCCCAGAGCGGCCTTTACCCCAATCCCAACCTCAAACCAGAAACACTCGAAACCTAAAGAGCCCCAATCTCCCTCTGCCTCCATCCCCGCCACCGCCTCCTGGAGCTGCTGCAGATCAGGATGAAGAGGATGAAGAAGAAGCTCTATATAACAGCCAGTTCTCCAATTGCCGCAACCCTGATCTTTTCGGCCGCTCCAGCAGTGCAAACGCACGTTTATACGCAGGCCTCACCAGCCCAATCTCCCCTCTAAGTCCTTTGACACCCAAATACGGCAGCTTTATAAGTCGAGATAACTCTCTCACGGGCATTAATGAGTTCGCATCCTCTTTAGGCACCTCCTATATAGACAGAGTATTAATTGAATGTTACACCGGACAGCAGACGCCGCAGCCAATGGAATGCGAGGCTGTTGCTGTGGCCCCGCCTCTTCCACCAGGAGACACGCCCCCTCCTCATGGACAAAGTGAAACGCTTGAAGTTCCACAGCAGATTAAGGTTTCACAGCCGAATGGAGAGCTGGCGACTGATGCGTTGCAGGCCGATGAGCAAAAACAAGCCATTGAGCCTGACGAGCAGCAGAATGAAGCTGCGGCAGGCTCTCAGAGAGGCAGTAGCTCAGGGATATTGAAGAGGCCACAGAGTCTGGCCTTAATGGAGGATCCGCTGATTGCTCCGAGCGCTGGATTGGATAACGGTCGTAGACGCACTGTTACTTTCAGTCAACAGGTGGCCAATATCCTGCTGAATGGCATGCGTTATGACAGTGACCTCAGTGGCAACCATGAAGCGGCAGATTCTCAGATGTCAATAAAGCTGCTCTGTACTGCCATCTACAGGATGCCTCCATGTTTACGAAGCCTGTGCACCAACCATTTCCTGGGTTGGTTATCGTTTGAGGGGATGCTGCTCTTCTACACTGACTTCATGGGGGAGGTGGTGTTTGGTGGAGACCCGAAGGCTCATCATGACTCAGAGGAGTACAAGCGCTACAATTCTGGCGTCAGCATGGGCTGCTGGGGCATGTGCATCTATGCATTTAGTGCTGCTTTTTATTCAGCCATTCTGGAGAAGCTGGAGGAGCGTTTCTCCCTGCGTTCTCTGTATTTTTTCGCCTATCTGGCCTTTGGTCTGGGCACTGGACTGGCCACCCTCTCCACCAACCTGTACGTGGTGCTGTCTCTCTGCGTCACCTACGGCGTCCTCTTCTCCTCTCTCTGTACGCTGCCTTACTCTCTGCTCTGCGAATACTACCAGAGCCCACAGGTGAGAGGAATCATCCCCACAACAAGCAACAGAGAATaa

Function

symbol description
slc45a1 Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008506 sucrose molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2152 Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).

Ensembl:

ensembl_id ENSDARG00000004302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007125 False 1042 mRNA 0.52 4 40649412 40674070
TCONS_00007126 False 2992 mRNA 0.54 10 40649413 40674070
TCONS_00007127 False 720 nonsense_mediated_decay 0.55 5 40649471 40655871
TCONS_00007128 True 1521 mRNA 0.52 4 40657612 40663238

Neighbor

gene id symbol gene type direction distance location
XLOC_003666 AL954137.2 coding upstream 7625 40617896 ~ 40641787 (+)
XLOC_003664 mmel1 coding upstream 43544 40530748 ~ 40605868 (+)
XLOC_003665 AL954137.1 coding upstream 71157 40573943 ~ 40578255 (+)
XLOC_003662 NA coding upstream 215332 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding upstream 337666 40306579 ~ 40311746 (+)
XLOC_003668 errfi1a coding downstream 138520 40812590 ~ 40847615 (+)
XLOC_003669 NA coding downstream 190885 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 coding downstream 215110 40889180 ~ 40889294 (+)
XLOC_003671 NA coding downstream 217611 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 coding downstream 223256 40897326 ~ 40899889 (+)
XLOC_003369 CR854846.2 misc upstream 24526330 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27937416 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27955149 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27963813 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27969384 12679732 ~ 12680028 (+)
XLOC_003659 NA non-coding upstream 532766 40111481 ~ 40116646 (+)
XLOC_003655 NA non-coding upstream 722540 39576541 ~ 39926872 (+)
XLOC_003654 NA non-coding upstream 1170145 39373712 ~ 39479267 (+)
XLOC_003653 NA non-coding upstream 1358778 39287369 ~ 39290634 (+)
XLOC_003676 CABZ01087025.2 non-coding downstream 518259 41192329 ~ 41201272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002109 slc45a1 coding CM030136.1 CM030136.1 3779297 ~ 3786544 (+)