G1727427


Basic Information

Item Value
gene id G1727427
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31600791 ~ 31601136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978739
tttaaacaatgccactttatataatgtttacataccctacattactcatctcatgtatatactgtactctatatcatctactgcatcttgcctacgccgttcagccatgactcattcatttatttttatgaacatattcttattcattcctttacacttgtgtgtgtataaggaagttgttgtgaaattgttaggttagattacttgttagatattactgcatggttggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtacgtgacaaataaaattggatttgatcgTGACGCCAAATTTCTCCTTGAAAGTCTTCCATAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978739 True 346 lncRNA 0.35 1 31600791 31601136

Neighbor

gene id symbol gene type direction distance location
tmem168a LOC106609249 coding upstream 11762 31568395 ~ 31589029 (+)
LOC110500240 LOC106609248 coding upstream 102961 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 134944 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 163952 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 496579 31104142 ~ 31104212 (+)
LOC110500245 LOC106609252 coding downstream 79804 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 84271 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 144637 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 272412 31873548 ~ 31894544 (+)
LOC110501063 LOC106609150 coding downstream 513277 32114413 ~ 32144886 (+)
G1727224 NA non-coding upstream 32630 31567955 ~ 31568161 (+)
G1727215 NA non-coding upstream 48002 31552493 ~ 31552789 (+)
G1727204 NA non-coding upstream 67202 31533328 ~ 31533589 (+)
G1727203 NA non-coding upstream 68536 31532018 ~ 31532255 (+)
G1727200 NA non-coding upstream 72081 31528482 ~ 31528710 (+)
G1727468 NA non-coding downstream 57219 31658355 ~ 31658590 (+)
G1727480 NA non-coding downstream 77342 31678478 ~ 31678731 (+)
G1728051 NA non-coding downstream 596383 32197519 ~ 32220621 (+)
G1728052 LOC106609139 non-coding downstream 635185 32236321 ~ 32239087 (+)
G1727220 NA other upstream 36197 31564135 ~ 31564594 (+)
G1727181 NA other upstream 92419 31508056 ~ 31508372 (+)
G1727146 NA other upstream 150674 31449396 ~ 31450117 (+)
G1726863 NA other upstream 459701 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 717178 30881776 ~ 30889293 (+)
LOC110500252 LOC106609149 other downstream 556776 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1720317 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2108956 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3838153 35439289 ~ 35484354 (+)

Expression


Co-expression Network