G1727480


Basic Information

Item Value
gene id G1727480
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 31678478 ~ 31678731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1978794
GGGATGTTCTTGTTCCCTCGTGCACTAGCGACTTCTGCAGCTGGCTGGGCGCAGTGTAAGCTggcacggtcaccaggtgtacggtgttccctccgacacattggtggggctggcttccgggttaagcgggcattgtgtcaagaagcagtgcggcttagctgggttgtgtttcggagggcgcacggctctcgaccttcgcctctcccaagtccgtaactaccaattggatatgacgaaattgaggagaaaaaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1978794 True 254 lncRNA 0.57 1 31678478 31678731

Neighbor

gene id symbol gene type direction distance location
tmem168a LOC106609249 coding upstream 89449 31568395 ~ 31589029 (+)
LOC110500240 LOC106609248 coding upstream 180648 31493462 ~ 31497830 (+)
LOC118942919 NA coding upstream 212631 31464252 ~ 31465847 (+)
LOC110500239 LOC106609244 coding upstream 241639 31427827 ~ 31436839 (+)
trnaa-ugc-149 NA coding upstream 574266 31104142 ~ 31104212 (+)
LOC110500245 LOC106609252 coding downstream 2209 31680940 ~ 31684896 (+)
LOC110500244 LOC106609251 coding downstream 6676 31685407 ~ 31736831 (+)
LOC110500247 LOC106609254 coding downstream 67042 31745773 ~ 31800121 (+)
LOC110500249 timp3 coding downstream 194817 31873548 ~ 31894544 (+)
LOC110501063 LOC106609150 coding downstream 435682 32114413 ~ 32144886 (+)
G1727468 NA non-coding upstream 19888 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 77342 31600791 ~ 31601136 (+)
G1727224 NA non-coding upstream 110317 31567955 ~ 31568161 (+)
G1727215 NA non-coding upstream 125689 31552493 ~ 31552789 (+)
G1727204 NA non-coding upstream 144889 31533328 ~ 31533589 (+)
G1728051 NA non-coding downstream 518788 32197519 ~ 32220621 (+)
G1728052 LOC106609139 non-coding downstream 557590 32236321 ~ 32239087 (+)
G1728064 NA non-coding downstream 561245 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 562705 32241436 ~ 32243283 (+)
G1727220 NA other upstream 113884 31564135 ~ 31564594 (+)
G1727181 NA other upstream 170106 31508056 ~ 31508372 (+)
G1727146 NA other upstream 228361 31449396 ~ 31450117 (+)
G1726863 NA other upstream 537388 31140597 ~ 31141090 (+)
LOC110500226 LOC106576059 other upstream 794865 30881776 ~ 30889293 (+)
LOC110500252 LOC106609149 other downstream 479181 32153116 ~ 32162456 (+)
G1729465 NA other downstream 1642722 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 2031361 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3760558 35439289 ~ 35484354 (+)

Expression


Co-expression Network