G1728052 (LOC106609139)


Basic Information

Item Value
gene id G1728052
gene name LOC106609139
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 32236321 ~ 32239087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1979406
TAAAATTTGGAAACAACAGTGCTGAATGACAACTCAAAGGCTGTGATACACCACACGTTTACAGAATCGTTGAGAAAAATGGTTTAATTTTCATGTTGAGGGAATCAAAAATATGCATTTCAACAATAAGCATTGTATTATCCACACAAAACGGTATACTAGAAAATACTGTAATTACCTACCAAAGTATTCAGCTTTTTAGCCCTCAGATTATCATACAATTATGTACAACACATACAGGAGATCTAGCATTAAAGGGACACTttgagattttggcaatgaagccctttatctacttccccagagtcagatgaactcat
>TU1979405
TCGTTGAGAAAAATGGTTTAATTTTCATGTTGAGGGAATCAAAAATATGCATTTCAACAATAAGCATTGTATTATCCACACAAAACGGTATACTAGAAAATACTGTAATTACCTACCAAAGTATTCAGCTTTTTAGCCCTCAGATTATCATACAATTATGTACAACACATACAGGAGATCTAGCATTAAAGGGACACTttgagattttggcaatgaagccctttatctacttccccagagtcagatgaactcatggataccatttttatgactTTATGAAGTTAGTTtagtgagccaatgctaactagtgttagcacaatgactggaagtctaagGTATCTACTAGCATAAtagcagttaccatagacttccagtcattgtgtgaacgctagttagcaattgcgctaacgttagttagcaacttccttccaactgcagacagagacatacaaatggatTCCATGAGTtctgggaagtagataaaggcATTACCAAAATCCTGAAGAATCCCTTTAAAGCTACTGATGCACTCAGTATTAAAAGGAAAGATTTACCCATTTAGAATCTTCTATCGTATTTGTGCATCTCTGAGCAATGTTCTATCGATTCCCAtggtcatttcatgttttcatgtgtatcggAGTGATTCGCCCTTCAAGCAGACAGAAATACAGTCGGTATGAAGAGTTTAGCATaatttttcccactaattggcTTTATTTCAATGACGCAAAACTCATCATatatttctgcctgcttgaacagGGAATCTTTCCTTTAAACAGAATTATGGCTATGTTTACACAGACAGGCCAATTATTAGACTGAGCTTTGTTATCTAAAAGTTAACAGATCCTGTCCTTGTCCCCGTGTAAGAACGGTCAATATTTGGTTACCTTCCTTTGACAGAAACACAGATGTGAGCCTCATGCTTTGATTCTATCTTATCAAAGAATCAAAATAACCACATGCAGCTTCACATAGTGGCAAACACAAAACCCACAATATCCACTGATTATATTGCAAAATCCAATGTTTTGTGTGCTTCTTTCACGCATAAAGCAATCATTTTGAATAAAGTCTTGAGGAAAATGAAATGGCGATCAACATTTGCGCTTTgacactgttgattacattttattttcctcAAGACTTTATTCAAAATGACTGCGTTATGCGTGACACCACACCGGAATCCTGGGAAAACAACACACCAAAATAAATAGCCTTTATTCAGGAAAACTAAAACACACACTTGTTGACTGTCGGGGGATTAATTCAAATTAGTTCTCATTATTTGCAGAGTGAGGAGCTGAACTCTTCTTctcccatcatcatcatcatcattacctcATCCCTGCCGTCCACCACGCCTGGTTCTGGTGCTGTTTGACCACCGCCTGCTTCTCCTGAGGGCTGAAGTGCAGGATGGTCAGTATGGCTGTGAGGGTCTGCTGACGCCCCCTGGTGTCCTGAAGGGTGAGGAACTTGTAGATTACGTTCTTGAGGTACTCCAAGTTGGCCCCCTCCCTGCCCTGGTCCCTGTGCCGTTTGTCCAGCCTGCCGCGGAGCTCAGCCACCTCCTCGTCGTAGCGCTCCCCGTTTGCGATCAGCTTCCCCTGCAGCTGGTGCACGTCCTCCTCTAGCCGGTGCTTCTGCCGCCGCAGCGAGCCGATCTCCACCTCCTTTCTTGCCAGCTGCTCGACGTACAGGAGGAGCGTGGGCTCGTTGGGCCCTGCCAGCCGCAATGCATGGGTGATGATGTCACTCTCCTCCTGCGCCAAGTCATCCATGTTGTTGgcgttgttgctgttgttgctgccGCCGTCCGCGGTCGCTCTGAAGTCCGCCCCCGTTTCTCCTTCGTCGCTGTGGTGGCTTCTGTAACCAGCGAGACTGTAGCCGATAGACTTCAGCTTCTCCAACTCCTGGTCCTTCTCTTGCAGTAGGGCCATGGTGCGGTCCCTCTGCCGGTGCAGTTCCCCCTCCAGCCTGAGGAGGCTCTCTCTGTATTGGGCCTCAGCCCGGTCAAGCTCCTGTTTATGACCCTGCTGCAGCATCCCTTTCCCCTGTTGACACTCCTCCAGCTCCCGGCGGTGCTTGGCCTCCGCCTCGTCGCCATGGATACGCAGGTTGATGTACTTCTCCTTGAGCTCAGCCAGCTGGTCACGGGCCTCCTCCAGCTCTTTGGCAAGGCTAGAGTCTTTAGCGTTCTTGTTCTTCAGCACCACCTGCGCCCGCACCTTGTAGCGCTCAAACTCCTCCTTCAGCTGCCCCAGTTCCTGCTGGTAGTACAGCGCAGAGGCCTTCTCCCCGTCTGACGACTCTCCCCAACTGCCCGTCCCCTGACCCAGCCGCCCCTCCATCTCAGCCATCTTCTCTATCTCCATGGTCTGCTCTGGGTGGTTCCTCTGTGTGGCTAGCAGAAGAAGTCTCTTCACCTTCTCCAGGCGCTCCTTCAGCACGTTCACGTCCAGGTTGGCCTCGTCCATGCTGAGGTCCAGGGGGGAACCGCGGGTGGAAGCGGCGATGGCCAGGGTCTTGTTCTCCGTGTCCAGCTGCAGGATGCGCTCTCTCAGCCAGTGGGCGTTCTGCTGGTCCCTCTGCCGGGCCTTCTCGCAGGCCCCAAGCAGCTCAGACAGCTCAGACACTCGCAACTCCAGGCTGGCCACACGGCCCTCCTCCAGCTGGGATTGCCCCT
>TU1979407
TCGTTGAGAAAAATGGTTTAATTTTCATGTTGAGGGAATCAAAAATATGCATTTCAACAATAAGCATTGTATTATCCACACAAAACGGTATACTAGAAAATACTGTAATTACCTACCAAAGTATTCAGCTTTTTAGCCCTCAGATTATCATACAATTATGTACAACACATACAGGAGATCTAGCATTAAAGGGACACTttgagattttggcaatgaagccctttatctacttccccagagtcagatgaactcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1979406 False 320 lncRNA 0.35 1 32236321 32236640
TU1979405 False 2701 lncRNA 0.49 1 32236387 32239087
TU1979407 True 254 lncRNA 0.34 1 32236387 32236640

Neighbor

gene id symbol gene type direction distance location
LOC110500255 LOC106609093 coding upstream 1580 32231148 ~ 32234741 (+)
LOC110501065 LOC106609145 coding upstream 18527 32189542 ~ 32217794 (+)
LOC110500253 LOC106609146 coding upstream 55718 32168800 ~ 32180603 (+)
LOC110500252 LOC106609149 coding upstream 73865 32153116 ~ 32162456 (+)
LOC110501063 LOC106609150 coding upstream 91435 32114413 ~ 32144886 (+)
arf4 LOC106609140 coding downstream 11535 32250622 ~ 32254298 (+)
vatf LOC106609141 coding downstream 18393 32257480 ~ 32261475 (+)
LOC110500258 LOC106609138 coding downstream 70956 32310043 ~ 32343558 (+)
LOC110500259 LOC106609137 coding downstream 126433 32365520 ~ 32395907 (+)
LOC110500261 irf5 coding downstream 170785 32409872 ~ 32420565 (+)
G1728051 NA non-coding upstream 15700 32197519 ~ 32220621 (+)
G1727480 NA non-coding upstream 557590 31678478 ~ 31678731 (+)
G1727468 NA non-coding upstream 577731 31658355 ~ 31658590 (+)
G1727427 NA non-coding upstream 635185 31600791 ~ 31601136 (+)
G1728064 NA non-coding downstream 889 32239976 ~ 32240175 (+)
G1728054 LOC106609139 non-coding downstream 2349 32241436 ~ 32243283 (+)
G1728065 NA non-coding downstream 4925 32244012 ~ 32244301 (+)
G1728066 NA non-coding downstream 5910 32244997 ~ 32245365 (+)
G1728072 NA non-coding downstream 22739 32261826 ~ 32266171 (+)
G1727220 NA other upstream 671727 31564135 ~ 31564594 (+)
G1727181 NA other upstream 727949 31508056 ~ 31508372 (+)
G1727146 NA other upstream 786204 31449396 ~ 31450117 (+)
G1729465 NA other downstream 1082366 33321453 ~ 33321761 (+)
LOC110500285 fam19a5 other downstream 1471005 33709461 ~ 33869016 (+)
G1732028 NA other downstream 3200202 35439289 ~ 35484354 (+)
G1732735 NA other downstream 3802244 36041331 ~ 36042488 (+)
LOC110500325 ppp2r5b other downstream 3994035 36189389 ~ 36237829 (+)

Expression


Co-expression Network